View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10388_low_4 (Length: 336)

Name: NF10388_low_4
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10388_low_4
NF10388_low_4
[»] chr4 (20 HSPs)
chr4 (1-320)||(19095569-19095884)
chr4 (132-320)||(24446910-24447114)
chr4 (131-233)||(37313500-37313601)
chr4 (132-320)||(12401138-12401347)
chr4 (231-320)||(12396176-12396265)
chr4 (132-247)||(38928601-38928715)
chr4 (132-247)||(18535224-18535337)
chr4 (184-314)||(33415824-33415952)
chr4 (132-193)||(12396344-12396405)
chr4 (256-320)||(18537802-18537866)
chr4 (132-191)||(18537972-18538029)
chr4 (13-96)||(9151349-9151431)
chr4 (132-195)||(13543808-13543870)
chr4 (46-96)||(22779242-22779292)
chr4 (132-174)||(33415977-33416019)
chr4 (258-320)||(52043761-52043823)
chr4 (277-320)||(18535160-18535203)
chr4 (183-237)||(18537906-18537960)
chr4 (263-320)||(38928509-38928564)
chr4 (268-320)||(13543904-13543956)
[»] chr2 (10 HSPs)
chr2 (132-320)||(31733096-31733284)
chr2 (132-320)||(45239312-45239500)
chr2 (132-240)||(38414459-38414567)
chr2 (231-320)||(17848952-17849041)
chr2 (132-197)||(28196334-28196399)
chr2 (184-320)||(17848235-17848369)
chr2 (133-189)||(17848812-17848868)
chr2 (132-193)||(17848155-17848215)
chr2 (261-320)||(28196504-28196561)
chr2 (261-314)||(11578442-11578494)
[»] chr7 (14 HSPs)
chr7 (132-320)||(4296267-4296455)
chr7 (132-247)||(42222888-42223001)
chr7 (132-197)||(20137603-20137668)
chr7 (132-190)||(24817851-24817909)
chr7 (263-320)||(9680715-9680772)
chr7 (128-193)||(11355006-11355070)
chr7 (132-192)||(9680542-9680601)
chr7 (183-247)||(20137532-20137596)
chr7 (210-320)||(11355109-11355216)
chr7 (132-195)||(9678864-9678926)
chr7 (261-320)||(20137440-20137497)
chr7 (13-75)||(23385391-23385453)
chr7 (268-320)||(9678960-9679012)
chr7 (132-168)||(24815587-24815623)
[»] chr1 (15 HSPs)
chr1 (132-320)||(50077005-50077193)
chr1 (132-314)||(12302850-12303032)
chr1 (232-320)||(11457808-11457896)
chr1 (132-197)||(40133658-40133723)
chr1 (232-320)||(50079154-50079242)
chr1 (132-202)||(50308008-50308077)
chr1 (132-197)||(17318612-17318677)
chr1 (130-191)||(50079324-50079385)
chr1 (183-247)||(40133729-40133793)
chr1 (132-170)||(14184109-14184147)
chr1 (199-247)||(17318700-17318748)
chr1 (184-247)||(50079248-50079310)
chr1 (132-192)||(11457977-11458036)
chr1 (261-314)||(17318784-17318835)
chr1 (132-190)||(49495705-49495759)
[»] chr3 (18 HSPs)
chr3 (128-320)||(6231165-6231377)
chr3 (132-247)||(47149341-47149457)
chr3 (132-247)||(3306518-3306633)
chr3 (135-320)||(51675084-51675290)
chr3 (232-320)||(880781-880869)
chr3 (132-247)||(3314404-3314519)
chr3 (132-247)||(890194-890308)
chr3 (132-320)||(53590911-53591123)
chr3 (130-320)||(54691902-54692113)
chr3 (243-314)||(47149236-47149307)
chr3 (242-320)||(890100-890178)
chr3 (255-320)||(3306662-3306727)
chr3 (255-320)||(3314548-3314612)
chr3 (183-240)||(880882-880938)
chr3 (232-320)||(31151189-31151275)
chr3 (184-240)||(31151120-31151176)
chr3 (137-192)||(880950-881004)
chr3 (132-169)||(23636727-23636764)
[»] chr8 (11 HSPs)
chr8 (132-245)||(36865331-36865445)
chr8 (132-320)||(35872709-35872913)
chr8 (132-320)||(40877907-40878092)
chr8 (132-197)||(30481031-30481096)
chr8 (242-320)||(30480834-30480912)
chr8 (242-309)||(36865463-36865530)
chr8 (130-193)||(5623236-5623296)
chr8 (132-190)||(13858965-13859023)
chr8 (184-247)||(5623161-5623224)
chr8 (153-193)||(14419691-14419731)
chr8 (183-234)||(26268674-26268726)
[»] chr5 (11 HSPs)
chr5 (132-314)||(1189952-1190154)
chr5 (132-247)||(31473036-31473150)
chr5 (132-247)||(16092629-16092744)
chr5 (183-320)||(9020033-9020170)
chr5 (232-320)||(25903963-25904051)
chr5 (132-197)||(36208298-36208363)
chr5 (255-320)||(31472944-31473007)
chr5 (232-320)||(36208440-36208528)
chr5 (261-314)||(16092541-16092594)
chr5 (199-247)||(36208386-36208434)
chr5 (127-164)||(20042765-20042802)
[»] chr6 (8 HSPs)
chr6 (184-305)||(3396168-3396289)
chr6 (136-320)||(3234061-3234242)
chr6 (232-320)||(3390274-3390362)
chr6 (132-189)||(3396095-3396152)
chr6 (132-193)||(3390132-3390193)
chr6 (132-240)||(26944926-26945032)
chr6 (132-190)||(15719423-15719481)
chr6 (132-186)||(32447821-32447875)
[»] scaffold0004 (2 HSPs)
scaffold0004 (132-197)||(79661-79725)
scaffold0004 (263-320)||(79761-79816)
[»] scaffold0045 (1 HSPs)
scaffold0045 (179-247)||(85051-85120)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 19095569 - 19095884
Alignment:
Q  1 caatacacccagttttggaggactttacaggttataactatgcttaggtaatgggtggataaattttggaaagtagttttcaactttggagttaggactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  19095569 caatacacccagttttggaggactttacaggttataactatgcttaggtaatgggtggataaattttggaaagtagttttcaactttggagttagga--- 19095665  T
Q  101 cactactttttgatctattcaacactctaactgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactt 200  Q
     ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19095666 -actactttttgatctattcaacattctaactgttgtgaaagtgatttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactt 19095764  T
Q  201 ttggagcagaattgacactttccattcgtaaaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttcc 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  19095765 ttggagcagaattgacactttccattcgtaaaaaatcggagcacgatttcgcggagaagaataaaaataaaacgtatttttatgggcctgatttggttcc 19095864  T
Q  301 aatttatgagggatgctttt 320  Q
    ||||||||||||||||||||    
T  19095865 aatttatgagggatgctttt 19095884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 24447114 - 24446910
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactttt-ggagcagaattgacactttccattcgta 230  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||    
T  24447114 tgttgtgaaagggactcaaaattgaataaattgaagtttgctgaagctgtcaaaattggagcacgatttttcggagcagaattgacacttt-cattcgta 24447016  T
Q  231 a----------------aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggat 314  Q
    |                ||||||||| |||||||||| | ||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  24447015 aaaaatcggagcatggcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacatatttttatgggcatgatttggttccaatttatgagggat 24446916  T
Q  315 gctttt 320  Q
    ||||||    
T  24446915 gctttt 24446910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 37313601 - 37313500
Alignment:
Q  131 ctgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattcgta 230  Q
    ||||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  37313601 ctgttgtgaaagtgactcaaaattggagaaattgaagtttac-gaagctgtcaaaatcggagtacgatttttggagaagaattgacactttccattcgta 37313503  T
Q  231 aaa 233  Q
    |||    
T  37313502 aaa 37313500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 12401347 - 12401138
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttg-gagcagaattgacactttccattcgta 230  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||| |||| ||||  ||||||||||| ||||||| |||||||    
T  12401347 tgttgtgaaagttactcaaaattggagaaattcaagtttgctgaagctgtcaaaatcggagtacgattttttagagcagaattggcactttc-attcgta 12401249  T
Q  231 aa---------------------aaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatga 309  Q
    ||                     ||||| || ||||| |||||| |||||||||||||||||||||||||||||  |||| ||||||||||| |||||||    
T  12401248 aataattagggcacgatctagaaaaatcagagcacgaattcgtgcagaagaataaaaataaaacgtatttttatgagcctgatttggttccagtttatga 12401149  T
Q  310 gggatgctttt 320  Q
    |||||||||||    
T  12401148 gggatgctttt 12401138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 12396265 - 12396176
Alignment:
Q  231 aaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||| || ||||| |||||| |||||||||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||||||    
T  12396265 aaaaatcagagcacgaattcgtgcagaagaataaaaataaaacgtatttttatgagcctgatttggttccagtttatgagggatgctttt 12396176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 38928715 - 38928601
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactt-ttggagcagaattgacactttccattcgta 230  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| || |||||||||||||| |||||| ||||| ||    
T  38928715 tgttgtgaaattgactcaaaattggagaaattga-gtttgctgaagctgtcaaaatcggagcacgatttcttggagcagaattggcacttt-cattcata 38928618  T
Q  231 aaaaatcggaccacgat 247  Q
    || ||||| | ||||||    
T  38928617 aataatcgaagcacgat 38928601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 18535337 - 18535224
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattcgtaa 231  Q
    |||||||||||||||| || |||| |||||||| ||||  || ||| |||||||||||||| |||| |||| ||| ||||||| ||||| ||||||||||    
T  18535337 tgttgtgaaagtgactcaatattgaagaaattggagtt--ctaaagctgtcaaaatcggagtacgatttttagagtagaattggcacttcccattcgtaa 18535240  T
Q  232 aaaatcggaccacgat 247  Q
    ||| ||||| ||||||    
T  18535239 aaagtcggagcacgat 18535224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 184 - 314
Target Start/End: Complemental strand, 33415952 - 33415824
Alignment:
Q  184 aaatcggagcacgactttt-ggagcagaattgacactttccattcgtaaaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtattttta 282  Q
    |||||||||||||| |||| |||||||||||| ||||||  ||||||||||||||||| |||||||| | | |||   | |||||||||||||||||||     
T  33415952 aaatcggagcacgattttttggagcagaattggcacttta-attcgtaaaaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtatttttg 33415854  T
Q  283 ttggcctaatttggttccaatttatgagggat 314  Q
      ||||| |||| |||||||||||||||||||    
T  33415853 --ggcctgattttgttccaatttatgagggat 33415824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 12396405 - 12396344
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagc 193  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||||| |||||||||||||||    
T  12396405 tgttgtgaaagttactcaaaattggagaaattcaagtttgctgaagctgtcaaaatcggagc 12396344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 18537866 - 18537802
Alignment:
Q  256 gaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||| ||||||||||||||||||||||| ||| | |||| ||||||||||||||| |||||||||    
T  18537866 gaagcataaaaataaaacgtatttttatgggcatgattttgttccaatttatgagtgatgctttt 18537802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 18538029 - 18537972
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcgga 191  Q
    |||||||||||||||| ||||||| |||||||||||||  |||||| |||||||||||||    
T  18538029 tgttgtgaaagtgactcaaaattgaagaaattgaagtt--ctgaagctgtcaaaatcgga 18537972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 9151349 - 9151431
Alignment:
Q  13 ttttggaggactttacaggttataactatgcttaggtaatgggtggataaattttggaaagtagttttcaactttggagttagg 96  Q
    |||||| |||||||| | |||||||||   ||||||||| ||||||||||||||  |||||||||||| || ||||||||||||    
T  9151349 ttttggtggactttaaaagttataacttgtcttaggtaaggggtggataaatttgagaaagtagtttt-aaatttggagttagg 9151431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 13543808 - 13543870
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcac 195  Q
    |||||||||| ||||| ||||||||||||||| |||| || ||||| |||||||||||||||||    
T  13543808 tgttgtgaaaatgactcaaaattggagaaatt-aagtatgttgaagctgtcaaaatcggagcac 13543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 22779292 - 22779242
Alignment:
Q  46 aggtaatgggtggataaattttggaaagtagttttcaactttggagttagg 96  Q
    |||||| ||||||||| |||| |||||||||||||||| ||||||||||||    
T  22779292 aggtaaggggtggatagatttgggaaagtagttttcaaatttggagttagg 22779242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 33416019 - 33415977
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctg 174  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  33416019 tgttgtgaaagtgactcaaaattggagaaattgaaatttgctg 33415977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 52043823 - 52043761
Alignment:
Q  258 agaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||||||||||||||||||| ||| ||  || |||||||||| | ||||||||||||    
T  52043823 agaataaaaataaaacgtatttttatgggcttagatttgttccaattttttagggatgctttt 52043761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 320
Target Start/End: Complemental strand, 18535203 - 18535160
Alignment:
Q  277 tttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||| ||||| |||| |||||||||||||||||||||||||    
T  18535203 tttttatgggcctgattttgttccaatttatgagggatgctttt 18535160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 18537960 - 18537906
Alignment:
Q  183 aaaatcggagcacgacttttggagcagaattgacactttccattcgtaaaaaatc 237  Q
    |||||||||| |||| |||| ||||||||||| ||||| | ||||||||||||||    
T  18537960 aaaatcggagtacgatttttagagcagaattggcacttccaattcgtaaaaaatc 18537906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 38928564 - 38928509
Alignment:
Q  263 aaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||||||||||||   ||||| |||| ||||||||||||||||||| |||||    
T  38928564 aaaaataaaacgtatttttg--ggcctgattttgttccaatttatgagggattctttt 38928509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 13543904 - 13543956
Alignment:
Q  268 taaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||||||||| ||  | |||||||| |||||||||||||||| ||||    
T  13543904 taaaacgtatttttatgggtttgatttggtttcaatttatgagggatgttttt 13543956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 31733284 - 31733096
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattcgtaa 231  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||| |||| ||||| |||||||||||||||||||||||||||    
T  31733284 tgttgtgaaagtgactcaaaattggagaaattgaagtttggtgaagctgtcaaaattggagtacgatttttgaagcagaattgacactttccattcgtaa 31733185  T
Q  232 aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||||| |||||||| ||| |||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  31733184 aaaatcggagcacgattttgtgcagaagagtaaaaataaaacgtatttttatgggcctgatttggttccaatttatgagggatgctttt 31733096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 45239500 - 45239312
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactttt-ggagcagaattgacactttccattcgta 230  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||| |||||||    
T  45239500 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacgatttttcggagcagaattggcactttc-attcgta 45239402  T
Q  231 aaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||| |||||||||  | ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||    
T  45239401 aaaaatcggagcacgatttcacgcagaagaataaaaataaaacgtatttttatgggcctgatttagttccaatttatgagggatgctttt 45239312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 38414567 - 38414459
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattcgtaa 231  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||| ||||||| |||||||| ||||||||||||||||    
T  38414567 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaattggagtacgatttttggaccagaattggcactttccattcgtaa 38414468  T
Q  232 aaaatcgga 240  Q
    |||||||||    
T  38414467 aaaatcgga 38414459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 17848952 - 17849041
Alignment:
Q  231 aaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||| |||||||||| | ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  17848952 aaaaatcggagcacgatttcgcgcagaagaataaaaataaaacgtatttatatgggcctgatttggttccaatttatgagggatgctttt 17849041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 28196334 - 28196399
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga 197  Q
    |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  28196334 tgttgtgaaagtgactcaaaaatggagaaattgaagtttgctgaagctgtcaaaatcggagtacga 28196399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 184 - 320
Target Start/End: Original strand, 17848235 - 17848369
Alignment:
Q  184 aaatcggagcacgacttt-tggagcagaattgacactttccattcgtaaaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtattttta 282  Q
    |||||||||||||| ||| ||  ||||||||| ||||||| ||||||||||||||||| |||||||| | | |||   | |||||||||||||||||||     
T  17848235 aaatcggagcacgattttatgttgcagaattggcactttc-attcgtaaaaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtatttttg 17848333  T
Q  283 ttggcctaatttggttccaatttatgagggatgctttt 320  Q
      ||||| |||| ||||||||||||||||||| |||||    
T  17848334 --ggcctgattttgttccaatttatgagggattctttt 17848369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 17848812 - 17848868
Alignment:
Q  133 gttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcg 189  Q
    ||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  17848812 gttgtgaaagtgactcaaaattggagaaattgaagtttgctgaaactgtcaaaatcg 17848868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 17848155 - 17848215
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagc 193  Q
    ||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||||||||    
T  17848155 tgttgggaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagc 17848215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 28196504 - 28196561
Alignment:
Q  261 ataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||||||||||||||   ||||| |||| ||||||||||||||||||| |||||    
T  28196504 ataaaaataaaacgtatttttg--ggcctgattttgttccaatttatgagggattctttt 28196561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 11578494 - 11578442
Alignment:
Q  261 ataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggat 314  Q
    ||||||||||||||||||||||  ||||| |||| |||||||||| ||||||||    
T  11578494 ataaaaataaaacgtatttttaggggcctgattt-gttccaatttttgagggat 11578442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 4296455 - 4296267
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactttt-ggagcagaattgacactttccattcgta 230  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||| ||||| |    
T  4296455 tgttgtgaaagtgactcaaaattggagaaattgaagcttgctgaagctgtcaaaatcggagcacgattttttggagcagaattgccactttc-attcgaa 4296357  T
Q  231 aaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||| |||||||| | | ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  4296356 aaaaatcggagcacgattttgcgcagaagaataaaaataaaacgtatttttatgggcctgatttggatccaatttatgagggatgctttt 4296267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 42222888 - 42223001
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattcgtaa 231  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  42222888 tgttgtgaaagtgacttaaaattggagaaattga-gtttgctgaagctgtcaaaatcggagcacgatttttggagcagaattgacacttt-cattcgtaa 42222985  T
Q  232 aaaatcggaccacgat 247  Q
    |||||| || ||||||    
T  42222986 aaaatcagagcacgat 42223001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 20137668 - 20137603
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga 197  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  20137668 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgttataatcggagcacga 20137603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 24817909 - 24817851
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcgg 190  Q
    |||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  24817909 tgttgtgaaagtgactcaaaattggagaaattgaagtttgttgaatttgtcaaaatcgg 24817851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 9680715 - 9680772
Alignment:
Q  263 aaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  9680715 aaaaataaaatgtatttttatgggcctgatttggttccaatttatgagggatgctttt 9680772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 11355006 - 11355070
Alignment:
Q  128 taactgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagc 193  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||    
T  11355006 taactgttgtgaaagtgactcaaaattgaagaaattg-agtttgctgaagctgtcaaaatcggagc 11355070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 9680542 - 9680601
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggag 192  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||    
T  9680542 tgttgtgaaagtgactcaaaattggagaaatt-aagtttgctgaagctgtcaaaatcggag 9680601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 20137596 - 20137532
Alignment:
Q  183 aaaatcggagcacgacttttggagcagaattgacactttccattcgtaaaaaatcggaccacgat 247  Q
    |||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||| | ||||||    
T  20137596 aaaatcggagtacgattttcggagcagaattggcactttccattcgtaaaaaatcgaagcacgat 20137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 320
Target Start/End: Original strand, 11355109 - 11355216
Alignment:
Q  210 aattgacactttccattcgtaaaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatga 309  Q
    ||||| ||||||| ||||||||||||||||| |||||||| | | |||   | |||||||||||||||||||   ||||| |||| ||||||||||||||    
T  11355109 aattggcactttc-attcgtaaaaaatcggagcacgattttgcgcagagtcagaaaaataaaacgtatttttg--ggcctgattttgttccaatttatga 11355205  T
Q  310 gggatgctttt 320  Q
    ||||| |||||    
T  11355206 gggattctttt 11355216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 9678864 - 9678926
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcac 195  Q
    |||||||||| ||||| ||||||||||||||| |||| || ||||| |||||||||||||||||    
T  9678864 tgttgtgaaaatgactcaaaattggagaaatt-aagtatgttgaagctgtcaaaatcggagcac 9678926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 20137497 - 20137440
Alignment:
Q  261 ataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||||||||||||||   ||||| |||| ||||||||||||||||||| |||||    
T  20137497 ataaaaataaaacgtatttttg--ggcctgattttgttccaatttatgagggattctttt 20137440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 23385391 - 23385453
Alignment:
Q  13 ttttggaggactttacaggttataactatgcttaggtaatgggtggataaattttggaaagta 75  Q
    ||||||||||||||| |||||||||||   |||||||||  |||||||||||||  |||||||    
T  23385391 ttttggaggactttataggttataacttgacttaggtaaatggtggataaatttgagaaagta 23385453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 9678960 - 9679012
Alignment:
Q  268 taaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||||||||| ||  | |||||||| |||||||||||||||| ||||    
T  9678960 taaaacgtatttttatgggtttgatttggtttcaatttatgagggatgttttt 9679012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 24815623 - 24815587
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagt 168  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  24815623 tgttgtgaaagtcactcaaaattggagaaattgaagt 24815587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 9e-58; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 50077193 - 50077005
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactttt-ggagcagaattgacactttccattcgta 230  Q
    |||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||| ||| ||||||  |||||||    
T  50077193 tgttgtgaaagtgactcaaaattagagaaattgaagtttgttgaagctgtcaaaatcggagcacgattttttggagcagatttggcacttta-attcgta 50077095  T
Q  231 aaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||| |||||||| | | |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  50077094 aaaaatcggagcacgattttgcgcagaagaataaaaataaaatgtatttttatgggcctgatttggttccaatttatgagggatgctttt 50077005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 132 - 314
Target Start/End: Complemental strand, 12303032 - 12302850
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttt-tggagcagaattgacactttccattcgta 230  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||||| ||| | |||||||||| ||| |||| ||| |||    
T  12303032 tgttgtgaaagtgattcaaaattggagaaattgaagtttgctaaagttgtcaaaagcggagcacgattttctagagcagaattaacattttc-atttgta 12302934  T
Q  231 aaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggat 314  Q
    |||||||||| |||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  12302933 aaaaatcggagcacgatttcgtgcagaagaataaaaataaaatgtatttttatgggcctgatttggttccaatttatgagggat 12302850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 11457896 - 11457808
Alignment:
Q  232 aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||    
T  11457896 aaaatcggagcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggtctgatttggttccaatttatgagggatgctttt 11457808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 40133658 - 40133723
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga 197  Q
    |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||    
T  40133658 tgttgtgaaagtgactcaaaattagagaaattgaagtttgctgaagctgtcaaaatcggagcacga 40133723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 50079242 - 50079154
Alignment:
Q  232 aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||||| |||||||||| |  |||||||||||||||||||||||||||| |  || ||||||||| ||||||||||||||||||||    
T  50079242 aaaatcggagcacgatttcgcgctgaagaataaaaataaaacgtatttttatggatctgatttggttcaaatttatgagggatgctttt 50079154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 50308077 - 50308008
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactttt 202  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||||| ||||    
T  50308077 tgttgtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaattggagcacgattttt 50308008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 17318612 - 17318677
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga 197  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||| | |||| ||||||||||||    
T  17318612 tgttgtgaaagtgactcaaaatcggagaaattgaagtttgctgaagctatcaatatcggagcacga 17318677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 50079385 - 50079324
Alignment:
Q  130 actgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcgga 191  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||    
T  50079385 actgttgtgaaagtgactccaaattgaagaaattgaagtttgctgaagctgtcaaaatcgga 50079324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 40133729 - 40133793
Alignment:
Q  183 aaaatcggagcacgacttttggagcagaattgacactttccattcgtaaaaaatcggaccacgat 247  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||    
T  40133729 aaaatcggagtacgacttttggagcataattggcactttccattggtaaaaaatcggagcacgat 40133793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 14184147 - 14184109
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagttt 170  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14184147 tgttgtgaaagtgacttaaaattggagaaattgaagttt 14184109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 17318700 - 17318748
Alignment:
Q  199 ttttggagcagaattgacactttccattcgtaaaaaatcggaccacgat 247  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  17318700 ttttggaccagaattgacagtttccattcgtaaaaaatcggagcacgat 17318748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 50079310 - 50079248
Alignment:
Q  184 aaatcggagcacgacttttggagcagaattgacactttccattcgtaaaaaatcggaccacgat 247  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||| ||||||||| ||||||    
T  50079310 aaatcggagcacgatttttggagcagatttggcacttt-cattcgtagaaaatcggagcacgat 50079248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 11458036 - 11457977
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggag 192  Q
    |||||||||| ||||| ||| |||||||| |||| ||||||||||||||||||||| ||||    
T  11458036 tgttgtgaaattgactcaaatttggagaatttga-gtttgctgaagttgtcaaaattggag 11457977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 17318784 - 17318835
Alignment:
Q  261 ataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggat 314  Q
    ||||||||||||||||||||||  | ||| |||| |||||||||||||||||||    
T  17318784 ataaaaataaaacgtattttta--gacctgattttgttccaatttatgagggat 17318835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 49495759 - 49495705
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcgg 190  Q
    |||||||||||||| |||||||||||||    |||||||||| || |||||||||||||    
T  49495759 tgttgtgaaagtgatttaaaattggaga----gaagtttgcttaatttgtcaaaatcgg 49495705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 128 - 320
Target Start/End: Original strand, 6231165 - 6231377
Alignment:
Q  128 taactgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattc 227  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  6231165 taactgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacaacttttggagtagaattgacacttt-cattc 6231263  T
Q  228 gtaaaaaatc---------------------ggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaattta 306  Q
    ||||||||||                     ||| |||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  6231264 gtaaaaaatcggagcacgatctggcaaaattggagcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcctgatttggttccaattta 6231363  T
Q  307 tgagggatgctttt 320  Q
    ||||||||| ||||    
T  6231364 tgagggatgatttt 6231377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 47149457 - 47149341
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga-cttttggagcagaattgacactttccattcgt- 229  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||||||||||| |||||||     
T  47149457 tgttgtgaaagtgactcaaaattggagaaattgaagtttgatgaagctgtcaaaatcggagcacgattttttggagcagaattgacacttt-cattcgta 47149359  T
Q  230 aaaaaatcggaccacgat 247  Q
    ||||||||||| ||||||    
T  47149358 aaaaaatcggagcacgat 47149341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 3306518 - 3306633
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttt-tggagcagaattgacactttccattcgta 230  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||| ||||||| |||||| ||||||||    
T  3306518 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctaaagctgtcaaaatcggagcacgattttctggagtagaattggcacttt-cattcgta 3306616  T
Q  231 aaaaatcggaccacgat 247  Q
    |||||||||| ||||||    
T  3306617 aaaaatcggagcacgat 3306633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 135 - 320
Target Start/End: Complemental strand, 51675290 - 51675084
Alignment:
Q  135 tgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttt-tggagcagaattgacactttccattcgtaaaa 233  Q
    ||||||||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||| ||| ||||||||||||| ||||||  ||||||||||    
T  51675290 tgtgaaagtgactcaaaattggagaaattgatgttttctgaagctgtcaaaatcggagcacgattttctggagcagaattgtcacttt-gattcgtaaaa 51675192  T
Q  234 aatcg---------------------gaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgaggg 312  Q
    |||||                     || |||||||||  ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||    
T  51675191 aatcggagcacgatctggcaaaatcagagcacgatttcacgtagaagaataaaaataaaacgtatttttataggtctgatttggttccaatttatgaggg 51675092  T
Q  313 atgctttt 320  Q
    ||| ||||    
T  51675091 atgttttt 51675084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 320
Target Start/End: Complemental strand, 880869 - 880781
Alignment:
Q  232 aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||||  |||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  880869 aaaatcggcgcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcctgatttggttccaatttatgagggatgctttt 880781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 3314404 - 3314519
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttt-tggagcagaattgacactttccattcgta 230  Q
    |||||||||||||| | ||||||| ||||||||||||||| ||||| ||||||||| ||||||||| ||| | |||||||||||||||||| ||||||||    
T  3314404 tgttgtgaaagtgattcaaaattgaagaaattgaagtttgttgaagctgtcaaaataggagcacgattttctagagcagaattgacacttt-cattcgta 3314502  T
Q  231 aaaaatcggaccacgat 247  Q
    |||||||||| ||||||    
T  3314503 aaaaatcggagcacgat 3314519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 890308 - 890194
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattcgtaa 231  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||| | |||||||| ||||||| |||||| |||||||||    
T  890308 tgttatgaaagtgactcaaaattggagaaattgaagtttgttgaagctgtcaaaatcggaccacaatttttggagtagaattggcacttt-cattcgtaa 890210  T
Q  232 aaaatcggaccacgat 247  Q
    |||||| || ||||||    
T  890209 aaaatcagagcacgat 890194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 132 - 320
Target Start/End: Original strand, 53590911 - 53591123
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactttt----ggagcagaattgacactttccattc 227  Q
    |||||||||| | ||| ||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||    |||||||||||||||||||| ||||    
T  53590911 tgttgtgaaaataactcaaaattgaagaaattgaagtttgctgaagctgtcaaaatcggagtacgatttttttttggagcagaattgacactttc-attc 53591009  T
Q  228 gtaaaa---------------------aatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaattta 306  Q
    ||||||                     ||||||| || ||||||| | ||||||||||||||||||||||||||||| ||||| |||||||||| |||||    
T  53591010 gtaaaacatcggaggatgatctggaaaaatcggagcatgatttcgcgcagaagaataaaaataaaacgtatttttatgggcctgatttggttccgattta 53591109  T
Q  307 tgagggatgctttt 320  Q
    ||||| ||||||||    
T  53591110 tgaggaatgctttt 53591123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 130 - 320
Target Start/End: Complemental strand, 54692113 - 54691902
Alignment:
Q  130 actgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagc--------------------acgacttttggagcag 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||                    |||| ||||||| |||    
T  54692113 actgttgtgaaagtgacttaaaattggagaaattgaagtttgctggagttgtcaaaatcgaagcacgaattgaaaaatcggattacgatttttggaccag 54692014  T
Q  210 aattgacactttccattcgtaaaaaatcgga--ccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttat 307  Q
    ||||| |||||||||||||||||||||||||   |||||||| | | |||   ||||||||||||| ||||||| | |||||||||| ||||||||||||    
T  54692013 aattggcactttccattcgtaaaaaatcggagcacacgattttgcgcagagtcataaaaataaaacatattttt-tgggcctaattttgttccaatttat 54691915  T
Q  308 gagggatgctttt 320  Q
    || |||| |||||    
T  54691914 gaaggattctttt 54691902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 243 - 314
Target Start/End: Complemental strand, 47149307 - 47149236
Alignment:
Q  243 acgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggat 314  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  47149307 acgatttcgcgcagaagaataaaaataaaacgtatttttatgggcttgatttggttccaatttatgagggat 47149236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 890178 - 890100
Alignment:
Q  242 cacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||| | | ||||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  890178 cacgattttgcgcagaagaataaaaacaaaatgtatttttatgggcctgatttggttccaatttatgagggatgctttt 890100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 3306662 - 3306727
Alignment:
Q  255 agaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||||||||||||||| || |||||| ||||| |||||||||||||||||||| |||| ||||    
T  3306662 agaagaataaaaataaaacatagttttatgggcctgatttggttccaatttatgagagatgttttt 3306727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 3314548 - 3314612
Alignment:
Q  255 agaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||||||||||| ||||||| || ||||| |||||| |||||||||||||||||||||||    
T  3314548 agaagaataaaaataaaaggtatttt-atgggcctgatttgggtccaatttatgagggatgctttt 3314612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 880938 - 880882
Alignment:
Q  183 aaaatcggagcacgacttttggagcagaattgacactttccattcgtaaaaaatcgga 240  Q
    |||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||||    
T  880938 aaaatcagagcacaacttttggagtagaattgacacttt-cattcgtaaaaaatcgga 880882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 31151189 - 31151275
Alignment:
Q  232 aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||| ||| ||| |||||| | ||||| |||||||||||||  |||||||| ||||| |||| ||| |||||||||||||||||||||    
T  31151189 aaaattggagcacaatttcgcgcagaagcataaaaataaaac--atttttatgggccttattttgttacaatttatgagggatgctttt 31151275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 31151120 - 31151176
Alignment:
Q  184 aaatcggagcacgacttttggagcagaattgacactttccattcgtaaaaaatcgga 240  Q
    |||||||||||||| |||| ||||||||||| ||||| |||||||||||| ||||||    
T  31151120 aaatcggagcacgatttttagagcagaattggcacttcccattcgtaaaatatcgga 31151176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 881004 - 880950
Alignment:
Q  137 tgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggag 192  Q
    ||||||||||| ||||| |||||| |||||||||| ||||| ||||||||||||||    
T  881004 tgaaagtgactcaaaat-ggagaagttgaagtttgttgaagctgtcaaaatcggag 880950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 23636727 - 23636764
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtt 169  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  23636727 tgttgtgaaagtgactcaaaattggagaaattggagtt 23636764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 132 - 245
Target Start/End: Original strand, 36865331 - 36865445
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagttt-gctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattcgta 230  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||    
T  36865331 tgttgtgaaagtgacttaaaattggagaaattgaagttttgctgaagttgtcaaaatcggagtacgatttttggagcagaattggcactttccattcgta 36865430  T
Q  231 aaaaatcggaccacg 245  Q
    |||||||||| ||||    
T  36865431 aaaaatcggagcacg 36865445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 35872913 - 35872709
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactttt-ggagcagaattgacactttccattcgta 230  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||    
T  35872913 tgttgtgaaagggactcaaaattgaataaattgaagtttgctgaagctgtcaaaattggagcacgatttttcggagcagaattgacacttt-cattcgta 35872815  T
Q  231 a----------------aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggat 314  Q
    |                ||||||||| |||||||||| | ||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||    
T  35872814 aaaaatcggagcatggcaaaatcggagcacgatttcgcgcagaagaataaaaataaaacatatttttatgggcatgatttggttccaatttatgagggat 35872715  T
Q  315 gctttt 320  Q
    ||||||    
T  35872714 gctttt 35872709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 132 - 320
Target Start/End: Complemental strand, 40878092 - 40877907
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga-cttttggagcagaattgacactttccattcgta 230  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||  ||||| |||||||||| |||||| ||||||||    
T  40878092 tgttgtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcacgattttttgaagcagaattggcacttt-cattcgta 40877995  T
Q  231 aaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||||||  ||||||| | | |||   | | ||||||||||||||||  | ||||| |||| ||||||||||||||||||| |||||    
T  40877994 aaaaatcggagtacgattttgcgcagagtcagataaataaaacgtatttt--tgggcctgattttgttccaatttatgagggattctttt 40877907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 30481096 - 30481031
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga 197  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30481096 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga 30481031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 30480912 - 30480834
Alignment:
Q  242 cacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||    
T  30480912 cacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcttgatttggttccaatttatgagggatgctttt 30480834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 36865463 - 36865530
Alignment:
Q  242 cacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatga 309  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||    
T  36865463 cacgatttcgcgaagaagaataaaaataaaacgtatttttatgggcttgatttgtttccaatttatga 36865530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 5623296 - 5623236
Alignment:
Q  130 actgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagc 193  Q
    ||||||||||||||   | ||||||||||||||| ||||||||||||| |||||||||||||||    
T  5623296 actgttgtgaaagt---tcaaaattggagaaattaaagtttgctgaagctgtcaaaatcggagc 5623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 13859023 - 13858965
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcgg 190  Q
    |||||||||| ||||| ||||||||||||||| ||||||| ||||  ||||||||||||    
T  13859023 tgttgtgaaaatgactaaaaattggagaaattaaagtttgttgaatctgtcaaaatcgg 13858965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 5623224 - 5623161
Alignment:
Q  184 aaatcggagcacgactt-ttggagcagaattgacactttccattcgtaaaaaatcggaccacgat 247  Q
    |||||||||||||| || |||||||||||||| |||||| |||||||| ||||||||| ||||||    
T  5623224 aaatcggagcacgatttattggagcagaattggcacttt-cattcgtacaaaatcggagcacgat 5623161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 14419731 - 14419691
Alignment:
Q  153 ttggagaaattgaagtttgctgaagttgtcaaaatcggagc 193  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  14419731 ttggagaaattgaagtttgctgaatctgtcaaaatcggagc 14419691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 26268726 - 26268674
Alignment:
Q  183 aaaatcggagcacgacttttgg-agcagaattgacactttccattcgtaaaaa 234  Q
    ||||||||||||||| |||||| | |||||||||||||||||  |||||||||    
T  26268726 aaaatcggagcacgatttttgggaccagaattgacactttcctctcgtaaaaa 26268674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 132 - 314
Target Start/End: Complemental strand, 1190154 - 1189952
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactt---------------------ttggagcaga 210  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||                     ||||||||||    
T  1190154 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaattggagcacgatttgagaaaacggagcacgattttttggagcaga 1190055  T
Q  211 attgacactttccattcgtaaaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgag 310  Q
    |||| ||||||| ||||||||||||||||| |||||||| | | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  1190054 attggcactttc-attcgtaaaaaatcggagcacgattttgggcagaagaataaaaataaaacgtatttttatgggcctgatttggttccaatttatgag 1189956  T
Q  311 ggat 314  Q
    ||||    
T  1189955 ggat 1189952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 31473150 - 31473036
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattcgtaa 231  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| ||| || ||||| |||    
T  31473150 tgttgtgaaagtgatttaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacgatttatggagcagaattggcacatt-cattcttaa 31473052  T
Q  232 aaaatcggaccacgat 247  Q
    ||||||||| ||||||    
T  31473051 aaaatcggagcacgat 31473036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 16092744 - 16092629
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgactttt-ggagcagaattgacactttccattcgta 230  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |||||||||| |||||| ||||||||    
T  16092744 tgttgtgaaactgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcggagcacgatttttcgaagcagaattggcacttt-cattcgta 16092646  T
Q  231 aaaaatcggaccacgat 247  Q
    |||||||||| ||||||    
T  16092645 aaaaatcggagcacgat 16092629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 183 - 320
Target Start/End: Original strand, 9020033 - 9020170
Alignment:
Q  183 aaaatcggagcacgacttttggagcagaattgacactttccattcgtaaaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtattttta 282  Q
    ||||| |||| |||| ||||||||||||||||||||||| |||| |||||||||||||  ||||||| | | |||| |||||||||||||| ||||||||    
T  9020033 aaaattggagtacgatttttggagcagaattgacacttttcatttgtaaaaaatcggagtacgattttgcgcagaacaataaaaataaaacatattttta 9020132  T
Q  283 ttggcctaatttggttccaatttatgagggatgctttt 320  Q
    | || || |||| ||||||||||||||| |||| ||||    
T  9020133 tgggtctgattttgttccaatttatgagagatgttttt 9020170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 25903963 - 25904051
Alignment:
Q  232 aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||    
T  25903963 aaaatcggagcacgatttcgcgcagaagaataaaaataaaacgtatttttatgggcctaatttggtttcaatttatgaaggatgctttt 25904051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 36208298 - 36208363
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga 197  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  36208298 tgttgtgaaagtgacttaaaattggtgaaattgaagtttgctgaagctgtcaaaatcggagcacga 36208363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 31473007 - 31472944
Alignment:
Q  255 agaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||    
T  31473007 agaagaataaaaataaa--gtatttttatgggcctgatttggttccaatttatgagggatgctttt 31472944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 36208440 - 36208528
Alignment:
Q  232 aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||||| || ||||||| | | ||||||||||||||||| ||||||||| ||||| |||| ||||||||||  |||||||||||||    
T  36208440 aaaatcggagcatgatttcgcgcaaaagaataaaaataaaacatatttttatgggcctgattttgttccaatttgcgagggatgctttt 36208528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 16092594 - 16092541
Alignment:
Q  261 ataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggat 314  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  16092594 ataaaaataaaacgtagttttatgggcctgatttggttccaatttatgagggat 16092541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 36208386 - 36208434
Alignment:
Q  199 ttttggagcagaattgacactttccattcgtaaaaaatcggaccacgat 247  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||||    
T  36208386 ttttggagcaaaattgacactttccattcgtaaaaaatcagagcacgat 36208434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 20042765 - 20042802
Alignment:
Q  127 ctaactgttgtgaaagtgacttaaaattggagaaattg 164  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  20042765 ctaactgttgtgaaagtgatttaaaattgaagaaattg 20042802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 184 - 305
Target Start/End: Original strand, 3396168 - 3396289
Alignment:
Q  184 aaatcggagcacgacttt-tggagcagaattgacactttccattcgtaaaaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtattttta 282  Q
    |||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  3396168 aaatcggagcacgattttctggagcagaattggcactttc-attcgtaaaaaatcggagcacgatttcgcgtagaagaataaaaataaaacgtattttta 3396266  T
Q  283 ttggcctaatttggttccaattt 305  Q
    | |  || ||||||||| |||||    
T  3396267 tggatctgatttggttctaattt 3396289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 3234242 - 3234061
Alignment:
Q  136 gtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttt-tggagcagaattgacactttccattcgtaaaaa 234  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||  ||| ||| ||  | ||||||||||||||| |||||||||||    
T  3234242 gtgaaagtgactcaaaattggagaaattga-gtttgctgaagctgtcaaaatcggagtccgattttatgttgtagaattgacactttc-attcgtaaaaa 3234145  T
Q  235 atcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||| |||||||| ||| |||   | |||||  ||||||||||||   ||||| |||| |||||||||||||| ||||||||||    
T  3234144 atcggagcacgattttgtgcagagtcagaaaaactaaacgtatttttg--ggcctgattttgttccaatttatgaaggatgctttt 3234061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 320
Target Start/End: Original strand, 3390274 - 3390362
Alignment:
Q  232 aaaatcggaccacgatttcgtgtagaagaataaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    ||||||||| ||| |||||| | ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||    
T  3390274 aaaatcggagcacaatttcgcgcagaagaataaatataaaacgtatttttatgggcctgatttggttccaatttatgagagatactttt 3390362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 3396095 - 3396152
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcg 189  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  3396095 tgttgtgaaagtgactcaaaattggagaaattgaagtttgctgaagctgtcaaaatcg 3396152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 3390132 - 3390193
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagc 193  Q
    |||||||||||||||| |||||||||||||||||||||| | |||| |||||||||||||||    
T  3390132 tgttgtgaaagtgactcaaaattggagaaattgaagtttacagaagctgtcaaaatcggagc 3390193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 240
Target Start/End: Original strand, 26944926 - 26945032
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacgacttttggagcagaattgacactttccattcgtaa 231  Q
    |||||||||||||||| ||||||| |||||||| ||||  |||| | |||||||||||||| |||| ||||  || |||||||  |||| ||||||||||    
T  26944926 tgttgtgaaagtgactcaaaattgaagaaattggagtt--ctgatgctgtcaaaatcggagtacgatttttttagaagaattggaacttcccattcgtaa 26945023  T
Q  232 aaaatcgga 240  Q
    |||||||||    
T  26945024 aaaatcgga 26945032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 15719423 - 15719481
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcgg 190  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||||    
T  15719423 tgttgtgaaagtgactcaaaattggagaaattaaagtttgctgaatctgtcaaaatcgg 15719481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 32447875 - 32447821
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaa 186  Q
    |||||||||||||||| ||||||||||||||| ||||||| ||||| ||||||||    
T  32447875 tgttgtgaaagtgactcaaaattggagaaatttaagtttgttgaagctgtcaaaa 32447821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 79661 - 79725
Alignment:
Q  132 tgttgtgaaagtgacttaaaattggagaaattgaagtttgctgaagttgtcaaaatcggagcacga 197  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||    
T  79661 tgttgtgaaagtgactcaaaattggagaaattg-agtttgctgaagctgtcaaaatcggagcacga 79725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 79761 - 79816
Alignment:
Q  263 aaaaataaaacgtatttttattggcctaatttggttccaatttatgagggatgctttt 320  Q
    |||||||||||||||||||   ||||| |||| ||||||||||||||||||| |||||    
T  79761 aaaaataaaacgtatttttg--ggcctgattttgttccaatttatgagggattctttt 79816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 85051 - 85120
Alignment:
Q  179 tgtcaaaatcggag-cacgactttt-ggagcagaattgacactttccattcgtaaaaaatcggaccacgat 247  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||    
T  85051 tgtcaaaatcggaggcacgattttttggagcagaattgacacttt-cattcgtaaaaaatcggaacacgat 85120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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