View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10388_low_5 (Length: 287)
Name: NF10388_low_5
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10388_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 277
Target Start/End: Original strand, 36775599 - 36775861
Alignment:
| Q |
15 |
agaaaccacgttgttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgtt |
114 |
Q |
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| T |
36775599 |
agaaaccacgttgttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgaggccccaccgtgacaatggaagattgtttttgtt |
36775698 |
T |
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| Q |
115 |
cctagaagtagtgtcggttccttcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacatttgctaatgaagaagagaaaattgtt |
214 |
Q |
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| T |
36775699 |
cctagaagtagtgtcggttccatcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacatttgctaatgaagaagagaaaattgtt |
36775798 |
T |
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| Q |
215 |
gatgactttgagcagcatggttcattgccaaggtcattgcctttgatcaatgttgttcctttg |
277 |
Q |
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| T |
36775799 |
gatgactttgagcaacatggttcattgccaaggtcattgcctttgatcaatgttgttcctttg |
36775861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 36788278 - 36788492
Alignment:
| Q |
15 |
agaaaccacgttgttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgtt |
114 |
Q |
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| T |
36788278 |
agaaaccacgttgttatcctcctccacttccttcactctttagtcatagccaaccacttcaaatgatgccccgccgtgacaatggaaggttgtctttgtt |
36788377 |
T |
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| Q |
115 |
cctagaagtagtgtcggttccttcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacatttg---ctaatgaagaagagaaaatt |
211 |
Q |
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| T |
36788378 |
cctacaagttgtgtcaattccttcacctaataaattcttcgctaagcgacaaaatggtcgccttatcctcacgtttgctactaatgatgaagaagaaatt |
36788477 |
T |
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| Q |
212 |
gttgatgactttgag |
226 |
Q |
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| T |
36788478 |
gatgaggactttgag |
36788492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 36760290 - 36760493
Alignment:
| Q |
23 |
cgttgttttcctcctccacttcctttactctttagtcaaagtcaaccactcaaaatgaggccccatcgtgacaatggaagattgtttttgttcctagaag |
122 |
Q |
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| T |
36760290 |
cgttgttttcctcctccacttccttcactttttagtcaaagccaaccacttcaaatgacaccccaacgtgacaatggaaggctgtttttgttcctacaag |
36760389 |
T |
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| Q |
123 |
tagtgtcggttccttcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacatttgctaatgaagaagagaaaattgttgatgactt |
222 |
Q |
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| T |
36760390 |
ttgtgtcagttccttcacataataacttcttcaccaagcgacaaaatggtcgtcttgtcctctcgtttaataatgatgaagaagaaattgatgatgagtt |
36760489 |
T |
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| Q |
223 |
tgag |
226 |
Q |
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|||| |
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| T |
36760490 |
tgag |
36760493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 36796753 - 36796865
Alignment:
| Q |
89 |
cgtgacaatggaagattgtttttgttcctagaagtagtgtcggttccttcacataacaacttcttggctaagcgacaaaatggtcgccttatactcacat |
188 |
Q |
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|||||||||||||| ||||||||||||| |||| ||| |||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||| | |
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| T |
36796753 |
cgtgacaatggaag---gtttttgttcctacaagttgtgcaggttccttcacacaactacttcttcgctaagcgacaaaatggtcgccttatcctcacgt |
36796849 |
T |
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| Q |
189 |
ttgctaatgaagaaga |
204 |
Q |
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|| | |||||||||| |
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| T |
36796850 |
ttaatgatgaagaaga |
36796865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 36797041 - 36797077
Alignment:
| Q |
230 |
catggttcattgccaaggtcattgcctttgatcaatg |
266 |
Q |
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| T |
36797041 |
catggttcattgccacggtcattgcctttgatcaatg |
36797077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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