View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10388_low_7 (Length: 253)
Name: NF10388_low_7
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10388_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 5677399 - 5677637
Alignment:
| Q |
15 |
ataggaccaatagcaaactgtttaaaccctctagccatcattgctattagaactctttgaaaaaggtcaattctaagaacagttagatcttcagcccacc |
114 |
Q |
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| T |
5677399 |
ataggaccaatagcaaactgtttaaaccctctagccatcattgctattagaactctttgaaaaaggtcaattctaagaacagttagatcttcagcccacc |
5677498 |
T |
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| Q |
115 |
aatcaacaactggtctctgttgagatgatacagaagacgacatcactccgtcggagccactatcacttcttacagatgtacacaattgactttccttgca |
214 |
Q |
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| T |
5677499 |
aatcaacaactggtctctgttgagatgatacagaagacgacatcactccgtcggagccactttcacttcttacagatgtacacaattgactttcgttgca |
5677598 |
T |
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| Q |
215 |
agcaatataagcaattgcatctatgcatttgctcaccaa |
253 |
Q |
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| T |
5677599 |
agcaatataagcaattgcatctatgcatttgctcaccaa |
5677637 |
T |
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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 39778012 - 39777900
Alignment:
| Q |
15 |
ataggaccaatagcaaactgtttaaaccctctagccatcattgctattagaactctttgaaaaaggtcaattctaagaacagttagatcttcagcccacc |
114 |
Q |
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|||||||||||| || | | |||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||| ||||||||||||||||||| |
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| T |
39778012 |
ataggaccaataccacaatttttaaaccctctagccatcattgcaattagaactctttggaaaaagtcaattttaagaactgttagatcttcagcccacc |
39777913 |
T |
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| Q |
115 |
aatcaacaactgg |
127 |
Q |
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| T |
39777912 |
aatcaacagctgg |
39777900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 47798162 - 47798250
Alignment:
| Q |
51 |
atcattgctattagaactctttgaaaaaggtcaattctaagaacagttagatcttcagcccaccaatcaacaactggtctctgttgaga |
139 |
Q |
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|||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||| |
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| T |
47798162 |
atcattgcaattagaactctttggaaaaagacaattctaagaacagttagatcttcagcccaccaatcaatagctggcctctggtgaga |
47798250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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