View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10388_low_8 (Length: 250)
Name: NF10388_low_8
Description: NF10388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10388_low_8 |
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| [»] chr1 (6 HSPs) |
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| [»] scaffold0690 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 9467080 - 9467321
Alignment:
| Q |
9 |
agcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaatt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9467080 |
agcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaatt |
9467179 |
T |
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| Q |
109 |
cgaacaatggtgccgagaacaagtaatagcaaagttgaaccgatgattccacctacaaattaaacattcaatatcctaactcatcgcagttatttaataa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9467180 |
cgaacaatggtgccgagaacaagtaatagcaaagttgaaccgatgattccacctacaaattaaacattcaatatcctaactcatcgcagttatttaataa |
9467279 |
T |
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| Q |
209 |
aaatgaaattaagggacaggaataaagatgcttcactctcac |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
9467280 |
aaatgaaattaagggacaggaataaagatgcttcactctcac |
9467321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 162
Target Start/End: Complemental strand, 9299855 - 9299702
Alignment:
| Q |
9 |
agcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaatt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| |
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| T |
9299855 |
agcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatggcgatgaatt |
9299756 |
T |
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| Q |
109 |
cgaacaatggtgccgagaacaagtaatagcaaagttgaaccgatgattccacct |
162 |
Q |
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| T |
9299755 |
cgaataatagcaccgagcataagcactagcaaagttaaaccgattattacacct |
9299702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 9257854 - 9257994
Alignment:
| Q |
9 |
agcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaatt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| |
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| T |
9257854 |
agcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattctttcatgatcttcgcctttcatcttgaaatggcgatgaatt |
9257953 |
T |
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| Q |
109 |
cgaacaatggtgccgagaacaagtaatagcaaagttgaacc |
149 |
Q |
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| T |
9257954 |
cgaacaatagcaccaagtacaagcactagtaaagttgaacc |
9257994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 9364157 - 9363982
Alignment:
| Q |
10 |
gcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaattc |
109 |
Q |
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| T |
9364157 |
gcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatcttaaaatagcgatatattt |
9364058 |
T |
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| Q |
110 |
gaacaatggtgccgagaacaagtaatagcaaagttgaaccgatgattccacctacaaattaaacattcaatatcct |
185 |
Q |
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| T |
9364057 |
gaaaaataaatccaaatacaagaacaagcacagttgagccaatcattgcacctacaaattaaacattcaatatcct |
9363982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 9337298 - 9337123
Alignment:
| Q |
10 |
gcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaattc |
109 |
Q |
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||||| ||||| || |||||||||||||| | |||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||| ||| |
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| T |
9337298 |
gcataagagaacctagttggctttaaagcactgtaatccttcaaaaagttttcaattcttgtatgatcttcgcttttcatcttaaaatagcgatatattt |
9337199 |
T |
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| Q |
110 |
gaacaatggtgccgagaacaagtaatagcaaagttgaaccgatgattccacctacaaattaaacattcaatatcct |
185 |
Q |
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| T |
9337198 |
gaaaaataaatccaaatacaagaacaagcacagttgagccaatcattgcacctacaaattaaacattcaatatcct |
9337123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 9242887 - 9242981
Alignment:
| Q |
10 |
gcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgata |
104 |
Q |
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| T |
9242887 |
gcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcacttttcatcttaaaatagtgata |
9242981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 9171258 - 9171082
Alignment:
| Q |
9 |
agcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaatt |
108 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | | |
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| T |
9171258 |
agcataggagaatctggttggctttaaagccttgtaatccttcaaaaagttttcgattcttttatgatcttcgcctttcatcttgaaatgatgatggact |
9171159 |
T |
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| Q |
109 |
cgaacaatggtgccgagaacaagtaatagcaaagttgaaccgatgattccacctacaaattaaacattcaatatcct |
185 |
Q |
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||||||| | ||||| ||||| | ||||||||||||||| || ||| ||||| |||||| ||||||||||||||| |
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| T |
9171158 |
tgaacaatagcaccgagcacaagcactagcaaagttgaaccaattattacacctgcaaatttaacattcaatatcct |
9171082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 15910740 - 15910913
Alignment:
| Q |
10 |
gcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaattc |
109 |
Q |
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||||| ||||| || ||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||||| || | ||| | ||| ||| |
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| T |
15910740 |
gcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcctttcattttaacatatctatatattt |
15910839 |
T |
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| Q |
110 |
gaacaatggtgccgagaacaagtaatagcaaagttgaaccgatgattccacctacaaattaaacattcaatatc |
183 |
Q |
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||| ||||| || | | ||| | || |||||||| || |||||| |||||||||||||||||||||||||| |
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| T |
15910840 |
gaaaaatggaaccaaatagaagaacaagaaaagttgagccaatgattacacctacaaattaaacattcaatatc |
15910913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 1366 - 1192
Alignment:
| Q |
10 |
gcataggagaatctggttggctttaaagccttataatccttcaaaaagttttcgattcttacatgatcttcgcctttcatcttgaaatagcgataaattc |
109 |
Q |
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||||| ||||| || ||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||||| || | ||| | ||| ||| |
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| T |
1366 |
gcataagagaacctagttggctttaaagccctgtaatccttcaaaaagttttcaattcttgtatgatcttcgcctttcattttaacatatctatatattt |
1267 |
T |
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| Q |
110 |
gaacaatggtgccgagaacaagta-atagcaaagttgaaccgatgattccacctacaaattaaacattcaatatc |
183 |
Q |
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||| ||||| || | | ||| | | ||| |||||| || |||||| |||||||||||||||||||||||||| |
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| T |
1266 |
gaaaaatggaaccaaatagaagaacaaggcagagttgagccaatgattacacctacaaattaaacattcaatatc |
1192 |
T |
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