View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10389_high_3 (Length: 435)

Name: NF10389_high_3
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10389_high_3
NF10389_high_3
[»] chr4 (24 HSPs)
chr4 (18-336)||(25409116-25409449)
chr4 (343-408)||(31152670-31152735)
chr4 (343-408)||(39170967-39171032)
chr4 (343-408)||(55631864-55631929)
chr4 (345-408)||(43047398-43047461)
chr4 (343-408)||(3708262-3708327)
chr4 (343-408)||(10384857-10384922)
chr4 (343-408)||(37667763-37667828)
chr4 (351-408)||(40411598-40411655)
chr4 (343-408)||(46608222-46608287)
chr4 (364-408)||(43447195-43447239)
chr4 (343-408)||(48380482-48380547)
chr4 (364-408)||(29821080-29821124)
chr4 (368-408)||(33394111-33394151)
chr4 (364-408)||(39332819-39332863)
chr4 (368-408)||(53987769-53987809)
chr4 (343-408)||(31657345-31657410)
chr4 (296-341)||(43140166-43140211)
chr4 (343-408)||(48336417-48336482)
chr4 (364-408)||(1377533-1377577)
chr4 (364-408)||(1613207-1613251)
chr4 (364-408)||(42185304-42185348)
chr4 (364-408)||(47834133-47834177)
chr4 (364-408)||(52818674-52818718)
[»] chr2 (20 HSPs)
chr2 (30-151)||(42376603-42376724)
chr2 (343-408)||(7724600-7724665)
chr2 (343-408)||(12208998-12209063)
chr2 (343-408)||(31603405-31603470)
chr2 (343-408)||(40471745-40471810)
chr2 (335-408)||(16126071-16126145)
chr2 (335-408)||(16333480-16333554)
chr2 (364-408)||(8373464-8373508)
chr2 (364-408)||(8896301-8896345)
chr2 (364-408)||(10333567-10333611)
chr2 (364-408)||(38963825-38963869)
chr2 (364-408)||(44022298-44022342)
chr2 (343-408)||(5096257-5096322)
chr2 (343-408)||(16127769-16127834)
chr2 (364-408)||(18504502-18504546)
chr2 (329-408)||(41436826-41436906)
chr2 (345-408)||(11277562-11277625)
chr2 (368-408)||(2831741-2831781)
chr2 (364-408)||(15177399-15177443)
chr2 (364-408)||(22718532-22718576)
[»] chr5 (25 HSPs)
chr5 (345-408)||(30721675-30721738)
chr5 (343-408)||(19344689-19344754)
chr5 (343-408)||(1098184-1098249)
chr5 (343-408)||(14607547-14607612)
chr5 (343-408)||(31191167-31191232)
chr5 (350-408)||(20022876-20022934)
chr5 (343-408)||(1781135-1781200)
chr5 (351-408)||(20040405-20040462)
chr5 (343-408)||(41263119-41263184)
chr5 (364-408)||(13548243-13548287)
chr5 (364-408)||(14633037-14633081)
chr5 (364-408)||(32474012-32474056)
chr5 (343-408)||(8627144-8627209)
chr5 (343-408)||(9936878-9936943)
chr5 (343-408)||(30211731-30211796)
chr5 (343-408)||(40079990-40080055)
chr5 (343-408)||(40316827-40316892)
chr5 (343-408)||(41410649-41410714)
chr5 (368-408)||(2551617-2551657)
chr5 (364-408)||(28142958-28143002)
chr5 (345-408)||(41042827-41042890)
chr5 (343-408)||(1831360-1831425)
chr5 (364-400)||(2799661-2799697)
chr5 (364-408)||(30788235-30788279)
chr5 (364-408)||(34347497-34347541)
[»] chr8 (18 HSPs)
chr8 (343-408)||(30464441-30464506)
chr8 (350-408)||(25691584-25691642)
chr8 (364-408)||(8496873-8496917)
chr8 (343-408)||(4327106-4327171)
chr8 (343-408)||(14378673-14378738)
chr8 (343-408)||(23437800-23437865)
chr8 (343-408)||(25009153-25009218)
chr8 (343-408)||(28583290-28583355)
chr8 (343-408)||(37094141-37094206)
chr8 (343-408)||(44887702-44887767)
chr8 (344-408)||(761560-761624)
chr8 (364-408)||(11756806-11756850)
chr8 (364-408)||(17523835-17523879)
chr8 (364-408)||(20671286-20671330)
chr8 (364-408)||(21132915-21132959)
chr8 (368-408)||(29917915-29917955)
chr8 (368-408)||(30653394-30653434)
chr8 (364-408)||(4960181-4960225)
[»] chr3 (27 HSPs)
chr3 (343-408)||(12948049-12948114)
chr3 (343-408)||(16434842-16434907)
chr3 (343-408)||(9484605-9484670)
chr3 (343-408)||(29793363-29793428)
chr3 (343-408)||(34669617-34669682)
chr3 (343-408)||(42098612-42098677)
chr3 (343-408)||(46866352-46866417)
chr3 (343-408)||(49076411-49076476)
chr3 (343-408)||(53274980-53275045)
chr3 (342-408)||(36364748-36364812)
chr3 (335-408)||(36179121-36179195)
chr3 (351-408)||(29455693-29455750)
chr3 (343-408)||(34263689-34263754)
chr3 (343-408)||(48927787-48927852)
chr3 (350-408)||(50673693-50673751)
chr3 (343-408)||(901073-901138)
chr3 (343-408)||(34555160-34555225)
chr3 (351-408)||(38878463-38878520)
chr3 (343-408)||(53055610-53055675)
chr3 (364-408)||(36594404-36594448)
chr3 (344-408)||(38833950-38834014)
chr3 (364-408)||(43394543-43394587)
chr3 (343-408)||(4945836-4945901)
chr3 (343-408)||(29720404-29720469)
chr3 (364-408)||(1325532-1325576)
chr3 (368-408)||(32961280-32961320)
chr3 (364-408)||(52094079-52094123)
[»] chr1 (23 HSPs)
chr1 (343-408)||(10100507-10100572)
chr1 (343-408)||(52749290-52749355)
chr1 (343-408)||(45299327-45299392)
chr1 (345-408)||(10124120-10124183)
chr1 (335-408)||(5945765-5945839)
chr1 (343-409)||(8251142-8251208)
chr1 (350-408)||(44741359-44741417)
chr1 (343-408)||(31651895-31651960)
chr1 (364-408)||(1821622-1821666)
chr1 (364-408)||(10648195-10648239)
chr1 (343-408)||(6017443-6017508)
chr1 (343-408)||(26543877-26543942)
chr1 (343-408)||(41855795-41855860)
chr1 (364-408)||(8048742-8048786)
chr1 (364-408)||(44452225-44452269)
chr1 (345-408)||(7075324-7075387)
chr1 (350-408)||(48389082-48389140)
chr1 (351-408)||(41855715-41855772)
chr1 (371-408)||(43453159-43453196)
chr1 (343-408)||(44240528-44240593)
chr1 (364-408)||(12685892-12685936)
chr1 (364-408)||(29253509-29253553)
chr1 (364-408)||(41414233-41414277)
[»] scaffold0001 (1 HSPs)
scaffold0001 (350-408)||(183982-184040)
[»] scaffold0221 (1 HSPs)
scaffold0221 (343-408)||(5385-5450)
[»] chr7 (18 HSPs)
chr7 (351-408)||(40231945-40232002)
chr7 (350-408)||(38069067-38069125)
chr7 (351-408)||(16807136-16807193)
chr7 (364-408)||(46242470-46242514)
chr7 (350-408)||(35693820-35693878)
chr7 (350-408)||(36819632-36819690)
chr7 (363-408)||(4620096-4620141)
chr7 (343-408)||(30462211-30462276)
chr7 (343-408)||(37101016-37101081)
chr7 (364-404)||(25274011-25274051)
chr7 (364-408)||(28016145-28016189)
chr7 (364-408)||(38441843-38441887)
chr7 (364-408)||(38850732-38850776)
chr7 (364-408)||(47713422-47713466)
chr7 (364-408)||(5842147-5842191)
chr7 (364-408)||(19817335-19817379)
chr7 (364-408)||(31496635-31496679)
chr7 (364-408)||(40818687-40818731)
[»] chr6 (22 HSPs)
chr6 (343-408)||(24798540-24798605)
chr6 (343-408)||(2397779-2397844)
chr6 (343-408)||(17496312-17496377)
chr6 (359-408)||(24825190-24825239)
chr6 (364-408)||(35117310-35117354)
chr6 (343-408)||(2656664-2656729)
chr6 (343-408)||(2667319-2667384)
chr6 (359-408)||(6188650-6188699)
chr6 (347-408)||(13358522-13358583)
chr6 (351-408)||(29515020-29515077)
chr6 (343-408)||(32541471-32541536)
chr6 (364-408)||(6142501-6142545)
chr6 (350-408)||(9022856-9022914)
chr6 (343-408)||(28483047-28483112)
chr6 (343-408)||(29795460-29795525)
chr6 (364-408)||(2141598-2141642)
chr6 (368-408)||(4890120-4890160)
chr6 (364-408)||(16661596-16661640)
chr6 (364-408)||(16969408-16969452)
chr6 (368-408)||(30699295-30699335)
chr6 (364-408)||(31948635-31948679)
chr6 (368-408)||(32673782-32673822)
[»] scaffold0281 (1 HSPs)
scaffold0281 (326-408)||(13095-13178)
[»] scaffold0500 (1 HSPs)
scaffold0500 (364-408)||(665-709)
[»] scaffold0069 (1 HSPs)
scaffold0069 (368-408)||(4475-4515)
[»] scaffold0204 (1 HSPs)
scaffold0204 (343-408)||(23939-24004)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 25409449 - 25409116
Alignment:
Q  18 aaaggtaaccggaggtttggatcataagagagaaggcacccagcatccttggcaacttccattgccttcagatgtgctgatctacatggctccacaatca 117  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25409449 aaaggtaacctaaggtttggatcataagagagaaggcacccagcatccttggcaacttccattgccttcagatgtgctgatctgcatggctccacaatca 25409350  T
Q  118 aacttatcgatccataatgaaatacttttgcctgaaaaatcatgtttcataattcaattactct---------------ttggtggcaaattgatcaaga 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||               | ||||  |||||||||||||    
T  25409349 aacttatcgatccataatggaatacttttgcctgaaaaatcatgtttcataattcaattactcttaggcattcgagacataggtgaaaaattgatcaaga 25409250  T
Q  203 tcgaactatccaaaacaatgcagattttgatttgtgttataatttaaaaacttggatcatctgatttgaccatcacactctcatcgatttgacccttaaa 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25409249 tcgaactatccaaaacaatgcagattttgatttgtgttataatttaaaaacttggatcatctgatttgaccatcacactcccatcgatttgacccttaaa 25409150  T
Q  303 ctaataaaatcaactaaaaggttccaaaattata 336  Q
    ||||||||||||||||||||||||||||||||||    
T  25409149 ctaataaaatcaactaaaaggttccaaaattata 25409116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 31152670 - 31152735
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  31152670 cgtcccacaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 31152735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 39170967 - 39171032
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||    
T  39170967 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttattttgaccatatttt 39171032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 55631929 - 55631864
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||    
T  55631929 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttattttgaccatatttt 55631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 43047398 - 43047461
Alignment:
Q  345 tcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||| |||||||| || | |||||||||||||||||||||||||||||| ||||||||||||||    
T  43047398 tcccgcaataaatgacttgtttgaaaatgtgcaattttaacctaacttactttgaccatatttt 43047461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 3708262 - 3708327
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||| |  | ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  3708262 cgtcccacaataaatgatctgtttgaaaatgtgcaattttgacctaacttactttgatcatatttt 3708327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 10384857 - 10384922
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  10384857 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttaaccatatttt 10384922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 37667828 - 37667763
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||| ||| ||||||||||||||    
T  37667828 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaatttactttgaccatatttt 37667763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 40411655 - 40411598
Alignment:
Q  351 aataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  40411655 aataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 40411598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 46608222 - 46608287
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | |||||||||||| |||||| |||||||||| ||||||||||||||    
T  46608222 cgtcccgcaataaatgacctgtttgaaaatgtgaaattttgacctaacttactttgaccatatttt 46608287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 43447195 - 43447239
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  43447195 tttgaaaatgtgcaattttgacctaacttactttgaccatatttt 43447239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 48380482 - 48380547
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||| | || | |||||||||||||| |||| |||||||||| ||||||||||||||    
T  48380482 cgtcccgcaataagtgacctgtttgaaaatgtgcatttttgacctaacttactttgaccatatttt 48380547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 29821080 - 29821124
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||    
T  29821080 tttgaaaatgtgcaattttgatctaacttactttgaccatatttt 29821124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 33394111 - 33394151
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  33394111 aaaatgtgcaattttgacctaacttactttgaccatatttt 33394151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 39332863 - 39332819
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||    
T  39332863 tttgaaaatgtgcaattttgaactaacttactttgaccatatttt 39332819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 53987809 - 53987769
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  53987809 aaaatgtgcaatattaacctaacttactttgaccatatttt 53987769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 31657410 - 31657345
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||| ||||| ||||||||| ||||| |||| ||||||||||||||    
T  31657410 cgtcccgcaataaatgacctatttaaaaatttgcaattttgacctagcttactttgaccatatttt 31657345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 43140166 - 43140211
Alignment:
Q  296 ccttaaactaataaaatcaactaaaaggttccaaaattatactctc 341  Q
    |||||||||||| |||||||||||||||| |  |||||||||||||    
T  43140166 ccttaaactaatcaaatcaactaaaaggtccataaattatactctc 43140211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 48336482 - 48336417
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| ||||| || |||  ||||||||||||||||||| |||||||||| ||||| | ||||||    
T  48336482 cgtcccgcaatagatgacacatttgaaaatgtgcaattttgacctaacttactttgatcgtatttt 48336417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 1377533 - 1377577
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  1377533 tttgaaaatttgcaattttgacctatcttactttgaccatatttt 1377577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 1613251 - 1613207
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| |||||| ||| ||||||||||||||    
T  1613251 tttgaaaatgtgtaattttgacctaatttactttgaccatatttt 1613207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 42185304 - 42185348
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| |||||| ||| ||||||||||||||    
T  42185304 tttgaaaatttgcaattttgacctaatttagtttgaccatatttt 42185348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 47834177 - 47834133
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| || ||||||| ||||||||||||||    
T  47834177 tttgaaaatgtgtaattttgacataacttactttgaccatatttt 47834133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 52818718 - 52818674
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| ||||||||||||| ||| |||||||| |||||    
T  52818718 tttgaaaatgtgtaattttaacctaatttactttgaccacatttt 52818674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 42376724 - 42376603
Alignment:
Q  30 aggtttggatcataagagagaaggcacccagcatccttggcaacttccattgccttcagatgtgctgatctacatggctccacaatcaaacttatcgatc 129  Q
    ||||| |||||||| ||||||||||| ||||| || ||||||||||||| ||||||||  ||||||||||||||||||||||||||||| ||||| ||||    
T  42376724 aggttaggatcataggagagaaggcagccagcctctttggcaacttccaatgccttcaagtgtgctgatctacatggctccacaatcaagcttatggatc 42376625  T
Q  130 cataatgaaatacttttgcctg 151  Q
    |||| || || ||||| |||||    
T  42376624 catagtggaaaactttagcctg 42376603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 7724665 - 7724600
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  7724665 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 7724600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 12208998 - 12209063
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  12208998 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 12209063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 31603470 - 31603405
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||| || | ||||||||||||||||||| |||||||||| |||||| |||||||    
T  31603470 cgtcccacaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgacaatatttt 31603405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 40471745 - 40471810
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| ||||||||||| | ||||||||||||||||||| || ||||||||||||| ||||||||    
T  40471745 cgtcccgcaataaataacctgtttgaaaatgtgcaattttgacttaacttattttgatcatatttt 40471810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 408
Target Start/End: Complemental strand, 16126145 - 16126071
Alignment:
Q  335 tactctctc-gtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||| |||||||| ||   ||||||||||||||||||| |||||||||| ||||||||||||||    
T  16126145 tactctctccgtcccgcaataaatgacccatttgaaaatgtgcaattttgacctaacttactttgaccatatttt 16126071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 408
Target Start/End: Original strand, 16333480 - 16333554
Alignment:
Q  335 tactctctc-gtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||| |||||||| ||   ||||||||||||||||||| |||||||||| ||||||||||||||    
T  16333480 tactctctccgtcccgcaataaatgacccatttgaaaatgtgcaattttgacctaacttactttgaccatatttt 16333554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 8373464 - 8373508
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  8373464 tttgaaaatgtgcaattttgacctaacttactttgaccatatttt 8373508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 8896301 - 8896345
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  8896301 tttgaaaatgtgcaattttgacctaacttactttgaccatatttt 8896345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 10333611 - 10333567
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| |||||||||||||||||||||||||    
T  10333611 tttgaaaatgtgtaattttgacctaacttattttgaccatatttt 10333567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 38963825 - 38963869
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  38963825 tttgaaaatgtgcaattttgacctaacttactttgaccatatttt 38963869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 44022298 - 44022342
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  44022298 tttgaaaatgtgcaattttaacctaacttactttgactatatttt 44022342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 5096257 - 5096322
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||| ||||||| || ||||||||||||| ||||||||    
T  5096257 cgtcccgcaataaattacctgtttgaaaatgtacaattttgacataacttattttgatcatatttt 5096322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 16127834 - 16127769
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | |||||||||||| |||||| |||||||||| ||||| ||||||||    
T  16127834 cgtcccgcaataaatgacctatttgaaaatgtgtaattttgacctaacttactttgatcatatttt 16127769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 18504502 - 18504546
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| || ||||||||||||||||||||||    
T  18504502 tttgaaaatgtgtaattttgacgtaacttattttgaccatatttt 18504546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 408
Target Start/End: Original strand, 41436826 - 41436906
Alignment:
Q  329 aaattatactctctc-gtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||| ||| |||||  ||||||| | || |||||||||||  |||||| |||||||||| ||||||||||||||    
T  41436826 aaattatactccctccgtcccgtaataaatgaaatgtttgaaaatgtataattttgacctaacttactttgaccatatttt 41436906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 11277562 - 11277625
Alignment:
Q  345 tcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||| |||||||| || | ||||||||||||||||||| || ||||||| ||||| ||||||||    
T  11277562 tcccgcaataaatgacctatttgaaaatgtgcaattttgacataacttactttgatcatatttt 11277625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 2831741 - 2831781
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| |||||| |||||||||| ||||||||||||||    
T  2831741 aaaatgtgtaattttgacctaacttactttgaccatatttt 2831781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 15177399 - 15177443
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||| |||||||||  ||||||| ||||||||||||||    
T  15177399 tttgaaaatgtacaattttaatttaacttactttgaccatatttt 15177443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 22718576 - 22718532
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  22718576 tttgaaaatttgcaattttgacctagcttactttgaccatatttt 22718532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 30721738 - 30721675
Alignment:
Q  345 tcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  30721738 tcccgcaataaatgacatatttgaaaatgtgcaattttgacctaacttattttgaccatatttt 30721675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 19344754 - 19344689
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||    
T  19344754 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttattttgaccatatttt 19344689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 1098184 - 1098249
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  1098184 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 1098249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 14607612 - 14607547
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |||| ||||||||||||||||||| |||||| ||| ||||||||||||||    
T  14607612 cgtcccgcaataaatgacatgtttgaaaatgtgcaattttgacctaatttaatttgaccatatttt 14607547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 31191232 - 31191167
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |||| ||||||||||||||||||| |||||| ||| ||||||||||||||    
T  31191232 cgtcccgcaataaatgacatgtttgaaaatgtgcaattttgacctaatttactttgaccatatttt 31191167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 20022876 - 20022934
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  20022876 caataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 20022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 1781200 - 1781135
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||| ||| ||||||||||||||    
T  1781200 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaagttactttgaccatatttt 1781135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 20040462 - 20040405
Alignment:
Q  351 aataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  20040462 aataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 20040405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 41263184 - 41263119
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| | || ||| ||||||||||||||| |||||||||| ||||||||||||||    
T  41263184 cgtccctcaataaatgatatgtttaaaaatgtgcaattttgacctaacttactttgaccatatttt 41263119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 13548243 - 13548287
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  13548243 tttgaaaatgtgcaattttgacctaacttactttgaccatatttt 13548287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 14633037 - 14633081
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  14633037 tttgaaaatgtgcaattttgacctaacttactttgaccatatttt 14633081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 32474056 - 32474012
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||    
T  32474056 tttgaaaatgtgtaattttaacataacttattttgaccatatttt 32474012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 8627144 - 8627209
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| ||||| || || | ||||||||||||||||||| | |||||||| ||||||||||||||    
T  8627144 cgtcccgcaatagatgacctatttgaaaatgtgcaattttgatctaacttactttgaccatatttt 8627209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 9936943 - 9936878
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| | || ||| ||||||||||||||| | |||| ||||||||||||||||||    
T  9936943 cgtcccgcaataaatgatatatttaaaaatgtgcaattttgatctaatttattttgaccatatttt 9936878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 30211796 - 30211731
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||| ||||||||||||||| | |||||||| ||||||||||||||    
T  30211796 cgtcccgcaataaatgacctgtttaaaaatgtgcaattttgatctaacttactttgaccatatttt 30211731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 40079990 - 40080055
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||| |||||| || || | ||||||||| | |||||||||||||||||| ||||||||||||||    
T  40079990 cgtcctacaatagatgacctatttgaaaatttacaattttaacctaacttactttgaccatatttt 40080055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 40316827 - 40316892
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||| ||| || |||||||||||    
T  40316827 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaatttacttcgaccatatttt 40316892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 41410714 - 41410649
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||| ||| || |||||||||||    
T  41410714 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaatttacttcgaccatatttt 41410649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 2551657 - 2551617
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  2551657 aaaatgtgcaattttgacctaacttattttaaccatatttt 2551617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 28142958 - 28143002
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||||    
T  28142958 tttgaaaatgtgcaattttaatctaatttactttgaccatatttt 28143002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 41042890 - 41042827
Alignment:
Q  345 tcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||| ||||||||||| | ||||||||| ||||||||| | ||| |||| ||||||||||||||    
T  41042890 tcccgcaataaataacctatttgaaaatttgcaattttgatctagcttactttgaccatatttt 41042827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 1831360 - 1831425
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| || ||| ||| || |||||||||||    
T  1831360 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacataatttacttcgaccatatttt 1831425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 400
Target Start/End: Original strand, 2799661 - 2799697
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgac 400  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  2799661 tttgaaaatgtgcaattttgacctaacttactttgac 2799697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 30788235 - 30788279
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| || ||||||| ||||||||||||||    
T  30788235 tttgaaaatgtgtaattttgacataacttactttgaccatatttt 30788279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 34347497 - 34347541
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| || ||||||| ||||||||||||||    
T  34347497 tttgaaaatgtgtaattttgacataacttactttgaccatatttt 34347541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 30464441 - 30464506
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  30464441 cgtcccgcaataaatgacatgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 30464506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 408
Target Start/End: Complemental strand, 25691642 - 25691584
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  25691642 caataaatgacatgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 25691584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 8496917 - 8496873
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  8496917 tttgaaaatgtgcaattttgacctaacttactttgaccatatttt 8496873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 4327171 - 4327106
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| | |||||||| ||||| ||||||||    
T  4327171 cgtcccgcaataaatgacttgtttgaaaatgtgcaattttgatctaacttactttgatcatatttt 4327106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 14378738 - 14378673
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| | |  ||||||||||||||||||| |||||||||| |||||| |||||||    
T  14378738 cgtcccgcaataaatgataggtttgaaaatgtgcaattttgacctaacttactttgactatatttt 14378673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 23437865 - 23437800
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||| ||  ||||||||||||||    
T  23437865 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaatttgctttgaccatatttt 23437800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 25009153 - 25009218
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| |||||| ||| ||||||||||||||    
T  25009153 cgtccctcaataaatgatctgtttgaaaatgtgcaattttgacctaatttactttgaccatatttt 25009218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 28583355 - 28583290
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| ||||| || || ||||||||||||||||||||| |||||| ||| ||||| ||||||||    
T  28583355 cgtcccgcaatagatgacctttttgaaaatgtgcaattttgacctaatttactttgagcatatttt 28583290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 37094141 - 37094206
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  37094141 cgtcccgcaataaatgacctatttgaaaatttgcaattttgacctagcttactttgaccatatttt 37094206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 44887767 - 44887702
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| |||| ||||| ||||||||||||||    
T  44887767 cgtcccgcaataaatgatctatttgaaaatgtgcaattttgacctgacttagtttgaccatatttt 44887702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 408
Target Start/End: Original strand, 761560 - 761624
Alignment:
Q  344 gtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||| |||||||| || | |||||||||||| |||||| |||||| ||| ||||||||||||||    
T  761560 gtcccgcaataaatgacctgtttgaaaatgtgtaattttgacctaatttactttgaccatatttt 761624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 11756806 - 11756850
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||    
T  11756806 tttgaaaatttgcaattttgacctaacttactttgaccatatttt 11756850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 17523835 - 17523879
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||    
T  17523835 tttgaaaatgtgcagttttaacctaacttactttgatcatatttt 17523879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 20671286 - 20671330
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||    
T  20671286 tttgaaaatgtgtaattttgacctaacttactttgaccatatttt 20671330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 21132959 - 21132915
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| || ||||||| ||||||||||||||    
T  21132959 tttgaaaatgtgcaattttgacttaacttactttgaccatatttt 21132915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 29917955 - 29917915
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| |||||| |||||||||||||||||||||||||    
T  29917955 aaaatgtgtaattttgacctaacttattttgaccatatttt 29917915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 30653394 - 30653434
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||| |||||||| ||||||||||||||    
T  30653394 aaaatgtgcaattttaatctaacttactttgaccatatttt 30653434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 4960181 - 4960225
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  4960181 tttgaaaatttgcaattttgacctagcttactttgaccatatttt 4960225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 12948049 - 12948114
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  12948049 cgtcccgcaataaatgacatgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 12948114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 16434907 - 16434842
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||    
T  16434907 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttattttgaccatatttt 16434842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 9484605 - 9484670
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  9484605 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 9484670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 29793428 - 29793363
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  29793428 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 29793363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 34669617 - 34669682
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |||| ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  34669617 cgtcccgcaataaatgacatgtttgaaaatgtgcaattttgacctaacttactttgatcatatttt 34669682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 42098677 - 42098612
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  42098677 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 42098612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 46866352 - 46866417
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||| | |||||||    
T  46866352 cgtcccgcaataaatgacatgtttgaaaatgtgcaattttgacctaacttattttggcaatatttt 46866417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 49076476 - 49076411
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  49076476 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 49076411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 53275045 - 53274980
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||||||||| ||||||||    
T  53275045 cgtcccgcaataaatgacctatttgaaaatgtgcaattttgacctaacttattttgatcatatttt 53274980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 36364812 - 36364748
Alignment:
Q  342 tcgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||| ||||||||||| | ||||||||||  ||||||| |||||||||||||||||||||||||    
T  36364812 tcgtcccgcaataaataacctatttgaaaatg--caattttgacctaacttattttgaccatatttt 36364748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 408
Target Start/End: Complemental strand, 36179195 - 36179121
Alignment:
Q  335 tactctctc-gtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||||||||||| | ||||||||||||||||||| || ||| ||| ||||| ||||||||    
T  36179195 tactctctccgtcccacaataaataacctgtttgaaaatgtgcaattttgacttaatttactttgatcatatttt 36179121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 29455750 - 29455693
Alignment:
Q  351 aataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  29455750 aataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 29455693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 34263754 - 34263689
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||| ||||||||||||||| |||||||||| ||||||||||||||    
T  34263754 cgtcccgcaataaatgacctgtttaaaaatgtgcaattttgacctaacttactttgaccatatttt 34263689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 48927852 - 48927787
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  48927852 cgtcccgcaataaatgatctgtttgaaaatgtgcaatttttacctaacttactttgaccatatttt 48927787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 50673693 - 50673751
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| || | ||||||||||||||||||| || ||||||| ||||||||||||||    
T  50673693 caataaatgacctgtttgaaaatgtgcaattttgacttaacttactttgaccatatttt 50673751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 901138 - 901073
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  901138 cgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacctaacttactttgatcatatttt 901073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 34555160 - 34555225
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||| | || | |||||||||||||| |||| |||||||||| ||||||||||||||    
T  34555160 cgtcccgcaataagtgacctgtttgaaaatgtgcatttttgacctaacttactttgaccatatttt 34555225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 38878520 - 38878463
Alignment:
Q  351 aataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||| || | ||||||||||||||||||| || ||| ||||||||||||||||||    
T  38878520 aataaatgacctgtttgaaaatgtgcaattttgacataaattattttgaccatatttt 38878463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 53055675 - 53055610
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||| ||||||||| ||   |||||||||||| |||||| |||||||| ||||||||||||||||    
T  53055675 cgtcctacaataaatgaccaatttgaaaatgtgtaattttgacctaactaattttgaccatatttt 53055610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 36594448 - 36594404
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||    
T  36594448 tttgaaaatgtgtaattttgacctaacttattttgatcatatttt 36594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 408
Target Start/End: Complemental strand, 38834014 - 38833950
Alignment:
Q  344 gtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||| |||||||| || | ||| |||||||| |||||| |||||||||| ||||||||||||||    
T  38834014 gtcccgcaataaatgacctgtttaaaaatgtgtaattttgacctaacttactttgaccatatttt 38833950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 43394587 - 43394543
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||| | | |||||||||||||||||||||||    
T  43394587 tttgaaaatgtgcaattctgatctaacttattttgaccatatttt 43394543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 4945901 - 4945836
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| ||| || || | ||||| ||| ||||||||| |||||||||| ||||||||||||||    
T  4945901 cgtcccaccatagatgacgtatttgagaatttgcaattttgacctaacttactttgaccatatttt 4945836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 29720404 - 29720469
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| |||||||||| ||||| | ||||||    
T  29720404 cgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacctaacttactttgatcctatttt 29720469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 1325576 - 1325532
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| |||||||||||||||||||| |||||  |||||||    
T  1325576 tttgaaaatttgcaattttaacctaacttactttgattatatttt 1325532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 32961280 - 32961320
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||| ||||||||| |||||||||| ||||||||||||||    
T  32961280 aaaatttgcaattttgacctaacttagtttgaccatatttt 32961320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 52094123 - 52094079
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| | |||||||| ||||||||||||||    
T  52094123 tttgaaaatttgcaattttgatctaacttaatttgaccatatttt 52094079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 10100572 - 10100507
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  10100572 cgtcccgcaataaatgacatgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 10100507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 52749290 - 52749355
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||||||||||||||||||    
T  52749290 cgtcccgcaataaatgacctgtttgaaaatgtgcaatttttacctaacttattttgaccatatttt 52749355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 45299327 - 45299392
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  45299327 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 45299392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 10124120 - 10124183
Alignment:
Q  345 tcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  10124120 tcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 10124183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 335 - 408
Target Start/End: Original strand, 5945765 - 5945839
Alignment:
Q  335 tactctctc-gtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||| |||||||| |||| ||||||||||||||||||| || ||| ||||||| ||||||||||    
T  5945765 tactctctccgtcccgcaataaatgacatgtttgaaaatgtgcaattttgacataatttattttaaccatatttt 5945839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 409
Target Start/End: Complemental strand, 8251208 - 8251142
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatattttc 409  Q
    |||||| |||||||| || | ||||||||||||||||||| | |||||||| |||||||||||||||    
T  8251208 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgatctaacttactttgaccatattttc 8251142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 44741359 - 44741417
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| |||| |||||| |||||||||||| | |||||||||||||||||||||||    
T  44741359 caataaatgacatatttgaatatgtgcaattttgatctaacttattttgaccatatttt 44741417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 31651960 - 31651895
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||||||||  |||| ||||||||||||||    
T  31651960 cgtcccgcaataaatgacctatttgaaaatgtgcaattttaacctggcttaatttgaccatatttt 31651895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 1821666 - 1821622
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  1821666 tttgaaaatgtgcaattttgacctaacttactttgaccatatttt 1821622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 10648239 - 10648195
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| |||||||||||||||||||||||||    
T  10648239 tttgaaaatgtgtaattttgacctaacttattttgaccatatttt 10648195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 6017508 - 6017443
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| | |||||||| ||||||||||||||    
T  6017508 cgtcccgcaataaatgatctgtttgaaaatgtgcaattttgatctaacttactttgaccatatttt 6017443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 26543877 - 26543942
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||| ||||||| |||||||||| ||||||||||||||    
T  26543877 cgtcccgcaataaatgatctgtttgaaaatgtacaattttgacctaacttactttgaccatatttt 26543942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 41855860 - 41855795
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||| |||||| ||||| | |||||||||| ||| | |||||||||| |||||||||||||||||    
T  41855860 cgtcctacaatagataacctatttgaaaatgagcattattaacctaacatattttgaccatatttt 41855795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 8048786 - 8048742
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||    
T  8048786 tttgaaaatttgcaattttgacctagcttattttgaccatatttt 8048742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 44452225 - 44452269
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||    
T  44452225 tttgaaaatgtgtaattttgacctaacttactttgaccatatttt 44452269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 7075387 - 7075324
Alignment:
Q  345 tcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||| |||||||| || | |||||||| |||||||||| | |||||||| ||||||||||||||    
T  7075387 tcccgcaataaatgacttgtttgaaaacgtgcaattttgatctaacttactttgaccatatttt 7075324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 48389082 - 48389140
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| || | ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  48389082 caataaatgacctatttgaaaatttgcaattttgacctagcttactttgaccatatttt 48389140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 41855772 - 41855715
Alignment:
Q  351 aataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||| || | ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  41855772 aataaatgacctatttgaaaatttgcaattttgacctagcttactttgaccatatttt 41855715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 43453196 - 43453159
Alignment:
Q  371 atgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  43453196 atgtgtaattttgacctaacttattttgaccatatttt 43453159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 44240528 - 44240593
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||| ||||| ||||||||| ||||| |||| ||||||||||||||    
T  44240528 cgtcccgcaataaatgacctatttaaaaatttgcaattttgacctagcttactttgaccatatttt 44240593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 12685936 - 12685892
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| | |||| ||||||||| ||||||||    
T  12685936 tttgaaaatgtgcaattttgatctaatttattttgatcatatttt 12685892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 29253509 - 29253553
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  29253509 tttgaaaatttgcaattttgacctagcttactttgaccatatttt 29253553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 41414233 - 41414277
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| ||||| |||| ||||||||||||||    
T  41414233 tttgaaaatttgcaattttgacctagcttactttgaccatatttt 41414277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 183982 - 184040
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||| | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  183982 caataaataacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 184040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 5385 - 5450
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  5385 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 5450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 408
Target Start/End: Original strand, 40231945 - 40232002
Alignment:
Q  351 aataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||    
T  40231945 aataaataacctgtttgaaaatgtgcaattttgacctaatttattttgaccatatttt 40232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 38069067 - 38069125
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  38069067 caataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 38069125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 16807193 - 16807136
Alignment:
Q  351 aataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  16807193 aataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 16807136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 46242514 - 46242470
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  46242514 tttgaaaatgtgcaattttgacctaacttactttgaccatatttt 46242470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 408
Target Start/End: Complemental strand, 35693878 - 35693820
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| || | ||||||||||||||||||| |||||||||| || |||||||||||    
T  35693878 caataaatgacctgtttgaaaatgtgcaattttgacctaacttacttcgaccatatttt 35693820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 36819632 - 36819690
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| || | ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  36819632 caataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgatcatatttt 36819690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 4620096 - 4620141
Alignment:
Q  363 ttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||    
T  4620096 ttttgaaaatgtgtaattttgacctaacttactttgaccatatttt 4620141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 30462276 - 30462211
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| || ||||||| ||||||||||||||    
T  30462276 cgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacttaacttactttgaccatatttt 30462211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 37101081 - 37101016
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| ||||| || || | |||||||||||| |||||| |||||||||| ||||||||||||||    
T  37101081 cgtcccgcaatagatgacctatttgaaaatgtgtaattttgacctaacttactttgaccatatttt 37101016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 25274051 - 25274011
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccata 404  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  25274051 tttgaaaatgtgcaattttgacctaacttactttgaccata 25274011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 28016145 - 28016189
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||    
T  28016145 tttgaaaatgtgcaattttgatctaacttactttgaccatatttt 28016189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 38441843 - 38441887
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||    
T  38441843 tttgaaaatgtgtaatttttacctaacttactttgaccatatttt 38441887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 38850732 - 38850776
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||    
T  38850732 tttgaaaatgtgtaattttgacctaacttactttgaccatatttt 38850776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 47713466 - 47713422
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||    
T  47713466 tttgaaaatgtgcaattttgacctaacttactttgaccgtatttt 47713422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 5842147 - 5842191
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||||| |||| ||| ||||| ||||||||    
T  5842147 tttgaaaatgtgcaattttaatctaatttactttgatcatatttt 5842191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 19817335 - 19817379
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||  ||||||||||||||||| |||||| |||||||    
T  19817335 tttgaaaatgtataattttaacctaacttactttgacaatatttt 19817379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 31496679 - 31496635
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||| ||||||| |||||||||| ||||||| ||||||    
T  31496679 tttgaaaatgtacaattttgacctaacttactttgaccgtatttt 31496635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 40818731 - 40818687
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| | |||||||| | ||||||||||||    
T  40818731 tttgaaaatgtgcaattttgatctaacttactctgaccatatttt 40818687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 24798605 - 24798540
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  24798605 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 24798540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 2397779 - 2397844
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||||||||||||| |||||| ||| ||||||||||||||    
T  2397779 cgtcccgcaataaatgacctgtttgaaaatgtgcaattttgacctaatttactttgaccatatttt 2397844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 17496377 - 17496312
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| |||||||||| ||||||||||||||    
T  17496377 cgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 17496312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 24825190 - 24825239
Alignment:
Q  359 acatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||| ||||||||||||||||||| |||||||||| ||||||||||||||    
T  24825190 acatgtttgaaaatgtgcaattttgacctaacttactttgaccatatttt 24825239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 35117310 - 35117354
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||    
T  35117310 tttgaaaatgtgcaattttaacataacttactttgaccatatttt 35117354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 2656729 - 2656664
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| |||||||||| |||||| |||||||    
T  2656729 cgtcccgcaataaatgagctgtttgaaaatgtgcaattttgacctaacttactttgactatatttt 2656664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 2667384 - 2667319
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| |||||||||| |||||| |||||||    
T  2667384 cgtcccgcaataaatgatctgtttgaaaatgtgcaattttgacctaacttactttgactatatttt 2667319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 408
Target Start/End: Complemental strand, 6188699 - 6188650
Alignment:
Q  359 acatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||| ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  6188699 acatgtttgaaaatgtgcaattttgacctaacttactttgagcatatttt 6188650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 408
Target Start/End: Original strand, 13358522 - 13358583
Alignment:
Q  347 ccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| || || | |||||||||||| |||||| |||||||||| ||||||||||||||    
T  13358522 ccacaatagatgacttatttgaaaatgtgtaattttgacctaacttactttgaccatatttt 13358583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 29515077 - 29515020
Alignment:
Q  351 aataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||| |||| | ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  29515077 aataagtaacctgtttgaaaatgtgcaattttgacctaacttactttgatcatatttt 29515020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 32541536 - 32541471
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| || | ||||||||| ||||||||| |||||| ||| ||||||||||||||    
T  32541536 cgtcccgcaataaatgacctgtttgaaaatatgcaattttgacctaatttactttgaccatatttt 32541471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 6142545 - 6142501
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  6142545 tttgaaaatgtgcaattttgacctaacttactttgatcatatttt 6142501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 9022856 - 9022914
Alignment:
Q  350 caataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| || | ||||||||| ||||||||| ||||||| || ||||||||||||||    
T  9022856 caataaatgacctgtttgaaaatatgcaattttgacctaacatactttgaccatatttt 9022914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 28483047 - 28483112
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| | |||||||| ||| ||||||||||    
T  28483047 cgtcccgcaataaatgatctgtttgaaaatgtgcaattttgatctaacttactttaaccatatttt 28483112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Original strand, 29795460 - 29795525
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| |||||||| |  | ||||||||||||||||||| | |||||||| ||| ||||||||||    
T  29795460 cgtcccgcaataaatgatctgtttgaaaatgtgcaattttgatctaacttactttaaccatatttt 29795525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 2141598 - 2141642
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||| ||||||| |||||||||| ||||| ||||||||    
T  2141598 tttgaaaatgtacaattttgacctaacttactttgatcatatttt 2141642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Complemental strand, 4890160 - 4890120
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||| |||||| ||| ||||||||||||||    
T  4890160 aaaatgtgcaattttgacctaatttactttgaccatatttt 4890120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 16661640 - 16661596
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||||| |||||||||| ||||||| ||||||    
T  16661640 tttgaaaatgtgtaattttgacctaacttactttgaccgtatttt 16661596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 16969408 - 16969452
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||||||| || ||| ||| ||||||||||||||    
T  16969408 tttgaaaatgtgcaattttgacttaatttactttgaccatatttt 16969452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 30699295 - 30699335
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||| |||||| |||||||||| ||||||||||||||    
T  30699295 aaaatgtgtaattttgacctaacttactttgaccatatttt 30699335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 31948679 - 31948635
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||||||||| |||| | || ||||||||||||||||||||||    
T  31948679 tttgaaaatgtgtaattatgacttaacttattttgaccatatttt 31948635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 32673782 - 32673822
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||| ||||||||| | |||||||||||||||||||||||    
T  32673782 aaaatttgcaattttgatctaacttattttgaccatatttt 32673822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 408
Target Start/End: Original strand, 13095 - 13178
Alignment:
Q  326 ccaaaattatactctctc-gtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||| |||||| ||| |||||||||||||| || | ||| ||||| ||||||||| ||||| |||| ||||||||||||||    
T  13095 ccaaaatcatactccctccgtcccacaataaatgacctgtttaaaaatttgcaattttgacctagcttactttgaccatatttt 13178  T

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Target: scaffold0500 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 709 - 665
Alignment:
Q  364 tttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||    
T  709 tttgaaaatatgcaattttgacctaacttagtttgaccatatttt 665  T

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Target: scaffold0069 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 408
Target Start/End: Original strand, 4475 - 4515
Alignment:
Q  368 aaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  4475 aaaatgtgcaattttgacctaacttattttgaccgtatttt 4515  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 24004 - 23939
Alignment:
Q  343 cgtcccacaataaataacatttttgaaaatgtgcaattttaacctaacttattttgaccatatttt 408  Q
    |||||| ||||| || |||  ||||||||||||||||||| |||||||||| ||||| | ||||||    
T  24004 cgtcccgcaatagatgacacatttgaaaatgtgcaattttgacctaacttactttgatcgtatttt 23939  T

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