View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10389_high_5 (Length: 405)
Name: NF10389_high_5
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10389_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 117 - 394
Target Start/End: Complemental strand, 2324087 - 2323818
Alignment:
| Q |
117 |
ttgatgtagctagtaaatggttgttttaagattgattctgcaatgtcatctaatcctataatagtggttgtgtcacatcagcaaaaaa--gctacaaaaa |
214 |
Q |
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| T |
2324087 |
ttgatgtagctaggaaatggttgttttaagattaattctgcaatatcatctaatcctataatagtcgttgtgtcacatcagtaaaaaaaagctacaaaaa |
2323988 |
T |
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| Q |
215 |
tgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaacatccattttttatgcttttaattttcgctcgagctagaaaaatttcttaaag |
314 |
Q |
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| T |
2323987 |
tgtgtataggtgaaaattattcaaagttgtaaaatagtgaatccaaacattcattttttatgcttttaattttcgctcgagctagaaaaatttcttaaag |
2323888 |
T |
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| Q |
315 |
atggcgagcgaaatacaaccaattgaaccaaattgtatttgttaatagaatccactagctatagcataaagggttttcat |
394 |
Q |
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| T |
2323887 |
gtggcgagcgaaatacaacca----------attgtatttgttaatagaatccactagctatagcataaagggttttcat |
2323818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 2344895 - 2344858
Alignment:
| Q |
331 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
368 |
Q |
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| T |
2344895 |
aaccaattgaaccaaattgtatttgttaatagaatcca |
2344858 |
T |
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