View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10389_high_9 (Length: 342)
Name: NF10389_high_9
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10389_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 14573386 - 14573076
Alignment:
| Q |
19 |
acttagacatgaaacatcttacaaaataaactcaattcataatttccgtcgcaatatttgcatgaaacaccaacatcttcattatcaaattcatcaacag |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14573386 |
acttagacgtgaaacatcttacaaaataaactcaattcataatttccgtcgcaatatttgcatgaaacaccaacatcttcattatcaaattcatcaacag |
14573287 |
T |
|
| Q |
119 |
accatgctgaatgattcttcaccaccttcatcgtcccacggctctgacatgtgctagaacaacacaaagacactgcttgattttgaaccaccacatgatt |
218 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14573286 |
accatgttgaatgattcttcaccaccttcattgtcccacggctctgacatgtgctagaacaacacaaagacactgcttgattttgaaccaccacatgatt |
14573187 |
T |
|
| Q |
219 |
tttcacccacatgctttgaataaaagacttcaccctcttccttgtaatactaatgcatgttgaatttttcaattcaccaaagagatcataaccaagtttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14573186 |
tttcacccacatgctttgaataaaagacttcaccctcttccttgtaatactaatgcatgtggaatttttcaattcaccaaagagatcataaccaagtttt |
14573087 |
T |
|
| Q |
319 |
cttccttcttc |
329 |
Q |
| |
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||||||||||| |
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| T |
14573086 |
cttccttcttc |
14573076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 29 - 332
Target Start/End: Complemental strand, 49666637 - 49666325
Alignment:
| Q |
29 |
gaaacatcttacaaaataaactcaattcataatttccgtcgcaatatttgcatgaaacaccaacatcttcattatcaaattcatcaacagaccatgctga |
128 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||| | || || |||| ||||||||| |||||| | | |||||| ||| |
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| T |
49666637 |
gaaacatcttagaaaataaactcaattcatagtttccgtcgcaatatttgcaaacaccaacatcatcatcattatcactttcatccataaaccatgttga |
49666538 |
T |
|
| Q |
129 |
atgattcttcaccaccttcatc---gtcccacggctctgacatgtgctagaacaacacaaagacactgcttgattttgaaccaccacatgatttttcacc |
225 |
Q |
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|| |||||||||||| | || ||| | || | || |||||||||||| |||||||||| | | ||||||||||| |||||||| ||| |||||| |
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| T |
49666537 |
gtgtttcttcaccaccaccttctctgtcttagggttgtggcatgtgctagaagaacacaaagagagtccttgattttgagccaccacaacattcttcacc |
49666438 |
T |
|
| Q |
226 |
cacatgctttgaataaaagacttcaccctcttcct------tgtaatactaatgcatgttgaatttttcaattcaccaaagagatcataaccaagttttc |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||| || |||| |||||| ||| ||||| ||||| ||||||||||||||| | |||||||||| |
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| T |
49666437 |
cacatgctttgaataaaagacttcaccctctttctacaacccacaatagtaatgcctgtggaattcttcaactcaccaaagagatcaaacccaagttttc |
49666338 |
T |
|
| Q |
320 |
ttccttcttcatc |
332 |
Q |
| |
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||||||||||||| |
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| T |
49666337 |
ttccttcttcatc |
49666325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 50911524 - 50911737
Alignment:
| Q |
29 |
gaaacatcttacaaaataaactcaattcataatttccgtcgcaatatttgcatgaaacaccaacatcttcattatcaaattcatcaacagaccatgctga |
128 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| | ||||| ||| |
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| T |
50911524 |
gaaacatcttacaaaacaaactcaattcataatttccgttgcaatatttgc---aaacaccaacatcatcattatcaaattcatccttaaaccatattga |
50911620 |
T |
|
| Q |
129 |
atgattcttcaccaccttcatcgtcccacggctctgacatgtgctagaacaacacaaagacactgcttgattttgaaccaccacatgatttttcacccac |
228 |
Q |
| |
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|| ||||||||||||||| || || | || ||||||||| || |||||||||||| | |||||||| || ||||||| ||| ||||||||| |
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| T |
50911621 |
gtgtttcttcaccaccttctctctctatgggttgtggcatgtgctaaaagaacacaaagacaatccttgatttggagacaccacaacattcttcacccac |
50911720 |
T |
|
| Q |
229 |
atgctttgaataaaaga |
245 |
Q |
| |
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||||||||||||||||| |
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| T |
50911721 |
atgctttgaataaaaga |
50911737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 46606734 - 46606846
Alignment:
| Q |
29 |
gaaacatcttacaaaataaactcaattcataatttccgtcgcaatatttgcatgaaacaccaacatcttcattatcaaattcatcaacagaccatgctga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |||||||||| ||||||||||||||||| | | |||||| ||| |
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| T |
46606734 |
gaaacatcttacaaaataaactcaattcatagtttccgttgcaatatttgc---aagcaccaacatcatcattatcaaattcatccataaaccatgttga |
46606830 |
T |
|
| Q |
129 |
atgattcttcaccacc |
144 |
Q |
| |
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|| |||||||||||| |
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| T |
46606831 |
gtgtttcttcaccacc |
46606846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 327
Target Start/End: Complemental strand, 34305262 - 34304947
Alignment:
| Q |
21 |
ttagacatgaaacatcttacaaaataaactcaattcataatttccgtcgcaatatttgcatgaaacaccaacatcttcattatcaaattcatcaacagac |
120 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||| ||| |||||||||||||||||||||| || |||||| ||||||||||||||||| | |
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| T |
34305262 |
ttagacttgaaacaacttacaaaataaacccaattcatgattcccgtcgcaatatttgcatgaaaaactaacatc---attatcaaattcatcaatttgc |
34305166 |
T |
|
| Q |
121 |
c---atgctgaatgattcttcaccaccttcatcgtcccacg---gctctgacatgtgctagaacaacacaaagacactgcttgattttgaaccaccacat |
214 |
Q |
| |
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| || |||||| || ||||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
34305165 |
ctccatagtgaatgttttttcaccaccttttctgtcccaccaccgctctgacatgtgctagaacaacacaaagacaattcttgattttgaaccaccaccg |
34305066 |
T |
|
| Q |
215 |
gatttttcacccacatgctttgaataaaagacttcaccctcttc------cttgtaatactaatgcatgttgaatttttcaattcaccaaagagatcata |
308 |
Q |
| |
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|||| ||| ||||||||||| |||||| |||| ||| |||||| || || ||||||||| | ||||||||||| |||||||||||||||| | |
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| T |
34305065 |
aatttctcaaccacatgcttttaataaatgactgcactctcttcctgcaactcacaagactaatgcacgatgaatttttcagttcaccaaagagatcaaa |
34304966 |
T |
|
| Q |
309 |
accaagttttcttccttct |
327 |
Q |
| |
|
|| | ||||||| ||||| |
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| T |
34304965 |
ccctaattttctttcttct |
34304947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 31001155 - 31001223
Alignment:
| Q |
181 |
cacaaagacactgcttgattttgaaccaccacatgatttttcacccacatgctttgaataaaagacttc |
249 |
Q |
| |
|
|||||||||| | ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31001155 |
cacaaagacaattcttgattttgaacaaccacatgatttttcactcacatgctttgaataaaagacttc |
31001223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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