View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10389_low_12 (Length: 379)
Name: NF10389_low_12
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10389_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 33177925 - 33178274
Alignment:
| Q |
17 |
agtgacatcacctattcaaattggaaatggagatattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcat |
116 |
Q |
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| T |
33177925 |
agtgacatcacctattcaaattggaaatggagatattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcat |
33178024 |
T |
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| Q |
117 |
gtccatagtgacactaagtttgatgctgaatatcttttcaacattgctgggaacattcttacacgttcaacccatgttgttgataactttgtgcaagtat |
216 |
Q |
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| T |
33178025 |
gtccatagtgacactaagtttgatgctgaatatcttttcaacattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtat |
33178124 |
T |
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| Q |
217 |
gtgtatatttgcatctatctctccattctttttattatatagtatactgcttctaactaaataatgttaacttgtttgtttattacgtagggacatgaat |
316 |
Q |
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| T |
33178125 |
gtgtatatttgcatctatctctccattctttttattatatagtatactgcttctaactaaataatgttaacttgtttgttta-tacgtagggacatgaat |
33178223 |
T |
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| Q |
317 |
atcaagcaagtgtggagcaattggacaacattaatccccctgctaacttca |
367 |
Q |
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| T |
33178224 |
atcaagcaagtgtggagcaattggacaacattaatccccctgctaacttca |
33178274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 23 - 359
Target Start/End: Original strand, 33155143 - 33155472
Alignment:
| Q |
23 |
atcacctattcaaattggaaatggagatattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccat |
122 |
Q |
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| T |
33155143 |
atcatctattcacattggaaatggagatattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccat |
33155242 |
T |
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| Q |
123 |
agtgacactaagtttgatgctgaatatcttttcaacattgctgggaacattcttacacgttcaacccatgttgttgataactttgtgcaagtatgtgtat |
222 |
Q |
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| T |
33155243 |
agtgacactaagtttgatgctgaatatcttttcaacattgctggcaacatccttacacgttcaacccatgttgttgataactttgtgcaagtatgtatat |
33155342 |
T |
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| Q |
223 |
atttgcatctatctctccattctttttattatatagtatactgcttctaactaaataatgttaacttgtttgtttattacgtagggacatgaatatcaag |
322 |
Q |
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| T |
33155343 |
atttgcacctattt----att-ttctttttatgtagtatactgcttttagttgaataatgttaacttgtttgattattac--agggacatgaacaacaaa |
33155435 |
T |
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| Q |
323 |
caagtgtggagcaattggacaacattaatccccctgc |
359 |
Q |
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| T |
33155436 |
caagtctggagcagttagataacattaacccccctgc |
33155472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 54 - 218
Target Start/End: Original strand, 33137385 - 33137549
Alignment:
| Q |
54 |
attgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttt |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33137385 |
attgaccataaccctttaaccatgtctgatgaacacattttggaagagatttatgtaactcatgtccatagtgacactaagtttgatgctgaatctcttt |
33137484 |
T |
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| Q |
154 |
tcaacattgctgggaacattcttacacgttcaacccatgttgttgataactttgtgcaagtatgt |
218 |
Q |
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| T |
33137485 |
tcaacattgctgggaacatccttacacgttcaacccatgttgttgataacgttctgcaagtatgt |
33137549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 49 - 217
Target Start/End: Complemental strand, 33290528 - 33290360
Alignment:
| Q |
49 |
atattattgaccataaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaata |
148 |
Q |
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| T |
33290528 |
atattattcacaataaccctttgatcatgtctgatatacaaattatgggggagatttattcaacccatgtccatagtgacaccaagtttgatgttgaatc |
33290429 |
T |
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| Q |
149 |
tcttttcaacattgctgggaacattcttacacgttcaacccatgttgttgataactttgtgcaagtatg |
217 |
Q |
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| T |
33290428 |
tcttttcaacattgctgcaaacattcttaggcgttcaacctatattgttgaaaacgttgtgcaagtatg |
33290360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 33121838 - 33121757
Alignment:
| Q |
63 |
aaccctttaaccatgtctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctg |
144 |
Q |
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| T |
33121838 |
aacccattaaccatgtctgatgaccagattttggatcaaatttactccactcatgtccacagtgacacaaaatttgatgctg |
33121757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 6679763 - 6679887
Alignment:
| Q |
78 |
tctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctgggaacattctta |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||| |
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| T |
6679763 |
tctgatgaacacattttggaagagatttattcaactcatgtctatagtgatactaagtttgatgctgaatatattttcaacattgctggaaacatccttg |
6679862 |
T |
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| Q |
178 |
cacgttcaacccatgttgttgataa |
202 |
Q |
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| T |
6679863 |
tgcgttcaatccatgttgttgataa |
6679887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 55125082 - 55124991
Alignment:
| Q |
78 |
tctgatgaacacattttggaagagatttattcaactcatgtccatagtgacactaagtttgatgctgaatatcttttcaacattgctgggaacat |
172 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
55125082 |
tctgatgaacacattttacaagagatttattcaact---gtccacagtgatgctaagtttgacgctgaatatcttttcaacattgctggaaacat |
55124991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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