View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10389_low_13 (Length: 370)
Name: NF10389_low_13
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10389_low_13 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr2 (4 HSPs) |
| |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 19309229 - 19308864
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19309229 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
19309130 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19309129 |
attgttggagaatccatccttctttcatgcatatcagatggatgtagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
19309030 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattataga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19309029 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgc----ttttttttctggtttcaaccattataga |
19308934 |
T |
|
| Q |
301 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19308933 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
19308864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 10125436 - 10125210
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
10125436 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcacaataatttcaacgaca |
10125337 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10125336 |
attgttggagaatccatccttctttcatgcatatcagatggatgtagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
10125237 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttg |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
10125236 |
gggtattttggcgatgttgtttctttg |
10125210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 10125211 - 10125177
Alignment:
| Q |
336 |
tgagacaagtgagtcatttagatggttgtttgata |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
10125211 |
tgagacaagtgagtcatttagatggttgtttgata |
10125177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 38254353 - 38253988
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38254353 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
38254254 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38254253 |
attgttggagaatccatccttctttcatgcatatcagatggatgtagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
38254154 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattataga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38254153 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgc----ttttttttctggtttcaaccattataga |
38254058 |
T |
|
| Q |
301 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38254057 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
38253988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 43155189 - 43155554
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43155189 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
43155288 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43155289 |
attgttggagaatccatccttctttcatgcatatcagatggatgtagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattat |
43155388 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattataga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43155389 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgc----ttttttttctggtttcaaccattataga |
43155484 |
T |
|
| Q |
301 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43155485 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
43155554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 39649259 - 39649625
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatgg-tgagattggatgtctttcaaaatattttcaacgac |
99 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||| |||| |||||||||||| || || ||| ||||||||||||||||||||||||||| | |
|
|
| T |
39649259 |
gatttacgcaggtggatgtaaaaaactacatcactgcaaaaagacaaagaagtatggtgtacgggtgatgttggatgtctttcaaaatattttcaacaat |
39649358 |
T |
|
| Q |
100 |
aattgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggatta |
199 |
Q |
| |
|
| | |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||||||| | |||||||||||||| |
|
|
| T |
39649359 |
agtcgttggagaatacatccttctttcatgcatatcagatggatacagaagaacaaattacaaatgtgattaggtgtgatgcaaatatgattttggatta |
39649458 |
T |
|
| Q |
200 |
cgggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattatag |
299 |
Q |
| |
|
|| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
39649459 |
cgtgtattttggtgatgttgtttcattggacaccacatattgtaccaatcatgccaatagaccacttgc----tctattttctggttttaaccattatag |
39649554 |
T |
|
| Q |
300 |
aggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
370 |
Q |
| |
|
|||| || |||| ||||| || |||||||||| ||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
39649555 |
aggtacaatcatttttggtgccgcactaatgtttgacgagataagtgagtcatttagatggttgttagata |
39649625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 268
Target Start/End: Complemental strand, 6274203 - 6274121
Alignment:
| Q |
186 |
atgattttggattacgggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgc |
268 |
Q |
| |
|
||||| |||||||| || ||||| |||||||| ||||||||||| || ||||| || |||||| ||| ||| |||||||||| |
|
|
| T |
6274203 |
atgatattggattatggatatttcggcgatgtagtttctttggatacaacatattgcaccaaccgtgctaatcgaccacttgc |
6274121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 11472513 - 11472878
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11472513 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
11472612 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11472613 |
attgttggagaatccatccttctttcatgcatatcagatggatgtagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
11472712 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattataga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11472713 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgc----ttttttttctggtttcaaccattataga |
11472808 |
T |
|
| Q |
301 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11472809 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
11472878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 10466787 - 10466424
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||| |||||||| ||||| ||||||| | |||||||||||||| |
|
|
| T |
10466787 |
gatttacagaggtggatgtaagaaactatatcactacaaaaagacaaagaagtatggtgtatggtgatgctggatatctttcacagtattttcaacgaca |
10466688 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
10466687 |
gttgttggagaatccgtccttcttttatgcatatcagatggatatagatgaacagattacaaatgtgttctggtgtgatgcaaatatgattttggattac |
10466588 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattataga |
300 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
10466587 |
gggtattttggtgatgttgtttcattggacaccacatattgtaccaacgatgccaatagaccgcttgc----ctttttttctggtttcaaccattataga |
10466492 |
T |
|
| Q |
301 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttga |
368 |
Q |
| |
|
||||| |||| ||||| || || ||||||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
10466491 |
ggttcgatcatttttggtgcagctctaatgtatgatgagacaattccatcatttaaatggttgtttga |
10466424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 43736439 - 43736076
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||| |||||||| ||||| ||||||| | |||||||||||||| |
|
|
| T |
43736439 |
gatttacagaggtggatgtaagaaactatatcactacaaaaagacaaagaagtatggtgtatggtgatgctggatatctttcacagtattttcaacgaca |
43736340 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
43736339 |
gttgttggagaatccgtccttcttttatgcatatcagatggatatagatgaacagattacaaatgtgttctggtgtgatgcaaatatgattttggattac |
43736240 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattataga |
300 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
43736239 |
gggtattttggtgatgttgtttcattggacaccacatattgtaccaacgatgccaatagaccgcttgc----ctttttttctggtttcaaccattataga |
43736144 |
T |
|
| Q |
301 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttga |
368 |
Q |
| |
|
||||| |||| ||||| || || ||||||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
43736143 |
ggttcgatcatttttggtgcagctctaatgtatgatgagacaattccatcatttaaatggttgtttga |
43736076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 7283390 - 7283026
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||| |||||||| ||||| ||||||| | |||||||||||||| |
|
|
| T |
7283390 |
gatttacagaggtggatgtaagaaactatatcactacaaaaagacaaagaagtatggtgtatggtgatgctggatatctttcacagtattttcaacgaca |
7283291 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
7283290 |
gttgttggagaatccgtccttcttttatgcatatcagatggatatagatgaacaaattacaaatgtgttctggtgtgatgcaaatatgattttggattac |
7283191 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattataga |
300 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
7283190 |
gggtattttggtgatgttgtttcattggacaccacatattgtaccaacgatgccaatagaccgcttgc---cttttttttctggtttcaaccattataga |
7283094 |
T |
|
| Q |
301 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttga |
368 |
Q |
| |
|
| ||| |||| ||||| || || ||||||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
7283093 |
gattcgatcatttttggtgcagctctaatgtatgatgagacaattccatcatttaaatggttgtttga |
7283026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 25380611 - 25380876
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25380611 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaaatattatggcatatggtgagattggatgtctttcataatattttcaacgaca |
25380710 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25380711 |
attgttggagaatccatccttctttcatgcatatcagatagatgtagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
25380810 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccactt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25380811 |
gggtattttggcgatgttgtttctttggacaccacgtactgtaccaactatgccaatagaccactt |
25380876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 17514362 - 17514236
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17514362 |
gatttacaaagaaggatgtaagaaactacatccttgcaaaaagaaaaagaagtatggcgtatggtgagattggatgtctttcacaatattttcaacgaca |
17514263 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttca |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17514262 |
attgttggagaatccatccttctttca |
17514236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 25380900 - 25380989
Alignment:
| Q |
281 |
ctggtttcaaccattatagaggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
370 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25380900 |
ctggtttcaaccattatagaggttcaatcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
25380989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 37164093 - 37164464
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37164093 |
gatttacagagaaggatgtaagaaactacatcattgcaaaaagaaaaagaagtatggcgtatggtgagattggatgtctttcacaatattttcaacgaca |
37164192 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37164193 |
attgttggagaatccatccttctttcatgcatatcagatggatgccaaagaacaaattacaaatgtgttttggtgtgatgcacgtatgattttggattac |
37164292 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgc--nnnnnnnnnnnnctggtttcaaccattata |
298 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
37164293 |
gggtattttggtgatgttgtttcattagacaccacatattgtaccaaccatgccaatagaccacttgcttttttttttctttctggttttaaccattata |
37164392 |
T |
|
| Q |
299 |
gaggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
370 |
Q |
| |
|
|||||||| |||| ||||| || |||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
37164393 |
gaggttcaatcatttttggtgcagcactaatgtatgatgagacaattgagtcatttaaatggttgtttgata |
37164464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27978876 - 27978928
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagt |
53 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| |||| |||||||| |
|
|
| T |
27978876 |
gatttacagaggtggatgtaagaaactatatcactacaaaaagacaaagaagt |
27978928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 25861220 - 25861583
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||| |||||||| ||||| ||||||| | |||||||||||| | |
|
|
| T |
25861220 |
gatttacagaggtggatgtaagaaactatatcactacaaaaagacaaagaagtatggtgtatggtgatgctggatatctttcacagtattttcaacgata |
25861319 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| | ||||||||||||||| |
|
|
| T |
25861320 |
gttgttggagaatccgtccttcttttatgcatatcagatggatatagatgaacagattacaaatgtgttctggtgtgatgcaaatatgattttggattac |
25861419 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattataga |
300 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
25861420 |
gggtattttggtgatgttgtttcattggacaccacatattgtaccaacgatgccaatagaccgcttgc----ctttttttctggtttcaaccattataga |
25861515 |
T |
|
| Q |
301 |
ggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttga |
368 |
Q |
| |
|
||||| |||| ||||| || || ||||||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
25861516 |
ggttcgatcatttttggtgcagctctaatgtatgatgagacaattccatcatttaaatggttgtttga |
25861583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 23190947 - 23191127
Alignment:
| Q |
17 |
tgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgacaattgttggagaatcca |
116 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||||| || | |||| ||||||| ||||| |||||||||||| ||||||| ||||||||| |
|
|
| T |
23190947 |
tgtaaaaaactacactaatgcaagaagaaaaagaagtatggtgtacgatgaggttggatgcatttcataatattttcaacaacaattg-tggagaatctg |
23191045 |
T |
|
| Q |
117 |
tccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggatt |
198 |
Q |
| |
|
|| |||||||||||||| |||||||| || | ||||| | |||||| ||||||| ||||| | | ||||||||||||| |
|
|
| T |
23191046 |
tctctctttcatgcatatgagatggatgtacacgaacaaaccccaaatgctttttggtatgatgaaaatatgattttggatt |
23191127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 5909746 - 5910112
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaa-gaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgac |
99 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||| ||| || || |||||||||||| |||||||| ||||| ||||||| | ||||||||||||| |
|
|
| T |
5909746 |
gatttacagaggtggatgtacgaaactatatcactacaaaaaagacaaagaagtatggtgtatggtgatgctggatatctttcacagtattttcaacgac |
5909845 |
T |
|
| Q |
100 |
aattgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggatta |
199 |
Q |
| |
|
| |||||||||||||| ||||||||| ||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
5909846 |
agttgttggagaatccgtccttcttttatgcatatcagatggatatagatgaacagattacaaatgtgttctggtgtgatgcaaatatgattttggatta |
5909945 |
T |
|
| Q |
200 |
cgggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagaccacttgcnnnnnnnnnnnnctggtttcaaccattatag |
299 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
5909946 |
cgggtattttggtgatgttgtttcattggacactacatattgtaccaacgatgccaatagaccgcttgc--ttttttttttctggtttcaaccattatag |
5910043 |
T |
|
| Q |
300 |
aggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttga |
368 |
Q |
| |
|
|||||| |||| ||||| || || ||||||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
5910044 |
aggttcgatcatttttggtgcagctctaatgtatgatgagacaattccatcatttaaatggttgtttga |
5910112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 26282217 - 26281962
Alignment:
| Q |
1 |
gatttacagaggtggatgtaagaaactacatcactgcaagaagaaaaagaagtatggcatatggtgagattggatgtctttcaaaatattttcaacgaca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||| ||||||| || |||||||||||| ||| |
|
|
| T |
26282217 |
gatttatagaggtggatgtaagaaac---atcactgcaagaagacaaagaagtatgatgtgtggtgagattgaatgtctt-cacaatattttcaacaaca |
26282122 |
T |
|
| Q |
101 |
attgttggagaatccatccttctttcatgcatatcagatggatctagaagaacatattacaaatgtgttttggtgtgatgcacagatgattttggattac |
200 |
Q |
| |
|
| ||||| |||||||||| | |||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
26282121 |
aatgttgcagaatccatcatcttttcatgcatattagatggacgtagaagaacatattacaaacatgttttggtgtgatgcatatatgattttggattac |
26282022 |
T |
|
| Q |
201 |
gggtattttggcgatgttgtttctttggacaccacatactgtaccaactatgccaatagacca |
263 |
Q |
| |
|
||||||||||| || || ||| |||||||| || || ||||||||| || |||||| |||| |
|
|
| T |
26282021 |
gggtattttgg---tgatgcttcattggacactacgtattgtaccaaccattccaataaacca |
26281962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 370
Target Start/End: Complemental strand, 26281944 - 26281855
Alignment:
| Q |
281 |
ctggtttcaaccattatagaggttcagtcatatttggggcggcactaatgtatgatgagacaagtgagtcatttagatggttgtttgata |
370 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||| || |||||||||||||| | ||| || ||||||||||| |||||||||||| |
|
|
| T |
26281944 |
ctggtttcaaccattatagaggtttattcaattttttggaagcactaatgtatgacgcgacgagaaagtcatttagacggttgtttgata |
26281855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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