View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10389_low_16 (Length: 294)
Name: NF10389_low_16
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10389_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 30719720 - 30719454
Alignment:
| Q |
10 |
gcagagagctgtggcaaatcaaccaatttccgtagctattgacgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtgga |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719720 |
gcagaaagctgtggcaaatcaaccaatttccgtagctattgatgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtgga |
30719621 |
T |
|
| Q |
110 |
actgagttggaccatggtgtcacagccgtaggttatggtgtcggtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719620 |
actgagttggaccatggtgtcacagccgtaggttatggtgtcggtaatgatggaaccaagtattggttggttaagaattcatggggaactgattggggtg |
30719521 |
T |
|
| Q |
210 |
aagaaggatacattaggatgcaaaggggcgtagatgcagccgaaggactttgtggcattgcaatgga |
276 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
30719520 |
aagaaggatacattaagatgcaaaggggagtcgatgcagccgaaggactttgtggcattgcaatgga |
30719454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 30881639 - 30881905
Alignment:
| Q |
10 |
gcagagagctgtggcaaatcaaccaatttccgtagctattgacgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtgga |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881639 |
gcagaaagctgtggcaaatcaaccaatttccgtagctattgatgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtgga |
30881738 |
T |
|
| Q |
110 |
actgagttggaccatggtgtcacagccgtaggttatggtgtcggtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881739 |
actgagttggaccatggtgtcacagccgtaggttatggtgtcggtaatgatggaaccaagtattggttggttaagaattcatggggaactgattggggtg |
30881838 |
T |
|
| Q |
210 |
aagaaggatacattaggatgcaaaggggcgtagatgcagccgaaggactttgtggcattgcaatgga |
276 |
Q |
| |
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||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
30881839 |
aagaaggatacattaagatgcaaaggggagtcgatgcagccgaaggactttgtggcattgcaatgga |
30881905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 44731150 - 44730892
Alignment:
| Q |
16 |
agctgtggcaaatcaaccaatttccgtagctattgacgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgag |
115 |
Q |
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|||||| ||||||||||| ||||| || || ||||| |||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||| |
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| T |
44731150 |
agctgtcgcaaatcaacctatttctgttgccattgatgctagtggatctgactttcaattttacaaaagcggtgtctttagtggttcatgtggaaccgag |
44731051 |
T |
|
| Q |
116 |
ttggaccatggtgtcacagccgtaggttatggtgtcggtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaag |
215 |
Q |
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||||| ||||||||||| || || |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
44731050 |
ttggatcatggtgtcaccgctgtgggttatggtgtcggtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggcgaagaag |
44730951 |
T |
|
| Q |
216 |
gatacattaggatgcaaaggggcgtagatgcagccgaaggactttgtggcattgcaatg |
274 |
Q |
| |
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|||||||||||||||||||||| || ||||| || |||||||| ||||||||||||||| |
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| T |
44730950 |
gatacattaggatgcaaaggggagtggatgccgctgaaggactctgtggcattgcaatg |
44730892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 16867533 - 16867279
Alignment:
| Q |
20 |
gtggcaaatcaaccaatttccgtagctattgacgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttgg |
119 |
Q |
| |
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||||| |||||||| ||||||||||| ||||| |||||||| || |||||||| || ||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
16867533 |
gtggctaatcaaccgatttccgtagccattgatgctagtggttccgactttcaattctacaaaagtggcgtctttactggttcatgcggaactgagttgg |
16867434 |
T |
|
| Q |
120 |
accatggtgtcacagccgtaggttatggtgtcggtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggata |
219 |
Q |
| |
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| |||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||| || || |||||||| || ||||||||||||||||| |
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| T |
16867433 |
atcatggtgttaccgccgtgggttatggtgttagtaatgatggaactaagtattggttggttaaaaactcttggggaaccgaatggggtgaagaaggata |
16867334 |
T |
|
| Q |
220 |
cattaggatgcaaaggggcgtagatgcagccgaaggactttgtggcattgcaatg |
274 |
Q |
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||||| ||||||||| || || ||||| || |||||||||||||||||||||||| |
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| T |
16867333 |
cattatgatgcaaagaggtgttgatgctgctgaaggactttgtggcattgcaatg |
16867279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 30892732 - 30892986
Alignment:
| Q |
20 |
gtggcaaatcaaccaatttccgtagctattgacgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttgg |
119 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || ||||| || || || || |||||||||||||||||||| |||||||||||||| ||| |||||| |
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| T |
30892732 |
gtggctaatcaaccaatttccgtagccattgatgcgagtggctccgatttccaattttacaaaagtggtgtcttcactggttcatgtggtactcagttgg |
30892831 |
T |
|
| Q |
120 |
accatggtgtcacagccgtaggttatggtgtcggtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggata |
219 |
Q |
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| |||||||| || || || |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30892832 |
atcatggtgttactgctgtgggttatggcattagtaatgatggaaccaagtattggttggttaagaattcatggggaaatgattggggtgaagaaggata |
30892931 |
T |
|
| Q |
220 |
cattaggatgcaaaggggcgtagatgcagccgaaggactttgtggcattgcaatg |
274 |
Q |
| |
|
|||||||||||||||| |||||||||| || ||||||||||||||||||||||| |
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| T |
30892932 |
cattaggatgcaaaggagcgtagatgctgctcaaggactttgtggcattgcaatg |
30892986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 31185320 - 31185268
Alignment:
| Q |
182 |
aagaattcatggggaactgattggggtgaagaaggatacattaggatgcaaag |
234 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |||| ||||| ||||||||||| |
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| T |
31185320 |
aagaattcatggggcactgtgtggggtgaaaaagggtacataaggatgcaaag |
31185268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 8899264 - 8899518
Alignment:
| Q |
20 |
gtggcaaatcaaccaatttccgtagctattgacgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttgg |
119 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||| |
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| T |
8899264 |
gtggcaaatcaaccaatttctgtagcaattgatgctagtggctctgactttcaattttacaaaagtggtgtatttaccggttcatgcggaactgagttgg |
8899363 |
T |
|
| Q |
120 |
accatggtgtcacagccgtaggttatggtgtcggtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggata |
219 |
Q |
| |
|
| || |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
8899364 |
atcacggtgtcactgccgtaggttatggtgtcagtaatgatggaaccaagtattggttggttaagaactcatggggaactgattggggtgaagaaggtta |
8899463 |
T |
|
| Q |
220 |
cattaggatgcaaaggggcgtagatgcagccgaaggactttgtggcattgcaatg |
274 |
Q |
| |
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||||| |||||||||||| || || || || ||||| || ||||||||||||||| |
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|
| T |
8899464 |
cattatgatgcaaaggggagttgaagctgctgaagggctctgtggcattgcaatg |
8899518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 26 - 274
Target Start/End: Original strand, 31727428 - 31727676
Alignment:
| Q |
26 |
aatcaaccaatttccgtagctattgacgctagtgggtctgactttcagttttacaaaagtggtgtctttactggttcatgtggaactgagttggaccatg |
125 |
Q |
| |
|
|||||||| |||| || || ||||| |||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
31727428 |
aatcaaccggtttcggtggccattgatgctagtggctctgacttccaattttacaaaagtggtgtatttactggttcatgtggaactgagttggatcatg |
31727527 |
T |
|
| Q |
126 |
gtgtcacagccgtaggttatggtgtcggtaatgatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacattag |
225 |
Q |
| |
|
|||| | | |||||||||||||| ||| | |||| ||| ||||||||||||| |||||||||||||||||| | |||||||||||||| |||||||| |
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| T |
31727528 |
gtgtagctgttgtaggttatggtgttggtgaagatgagactgagtattggttggtgaagaattcatggggaactcaatggggtgaagaagggtacattag |
31727627 |
T |
|
| Q |
226 |
gatgcaaaggggcgtagatgcagccgaaggactttgtggcattgcaatg |
274 |
Q |
| |
|
|||||||||||| || ||||| | |||||||| ||||||||||||||| |
|
|
| T |
31727628 |
gatgcaaaggggtgtggatgcttcagaaggactatgtggcattgcaatg |
31727676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 4744895 - 4744959
Alignment:
| Q |
158 |
gatggaactaagtattggttggttaagaattcatggggaactgattggggtgaagaaggatacat |
222 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||| | | ||||||||||||||| ||||| |
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|
| T |
4744895 |
gatggaactaagtattggttgattaagaattcttggggtaaaggttggggtgaagaaggctacat |
4744959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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