View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10389_low_17 (Length: 293)

Name: NF10389_low_17
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10389_low_17
NF10389_low_17
[»] chr7 (2 HSPs)
chr7 (1-293)||(38632125-38632417)
chr7 (11-290)||(38634871-38635165)
[»] chr1 (22 HSPs)
chr1 (1-184)||(35190610-35190793)
chr1 (1-184)||(35295600-35295783)
chr1 (1-193)||(35225181-35225373)
chr1 (1-183)||(45525735-45525917)
chr1 (1-183)||(45531845-45532027)
chr1 (54-184)||(35219391-35219521)
chr1 (11-111)||(35216208-35216308)
chr1 (1-184)||(35270683-35270866)
chr1 (1-178)||(35147596-35147773)
chr1 (54-193)||(8639228-8639367)
chr1 (57-184)||(35200235-35200362)
chr1 (1-184)||(35263258-35263441)
chr1 (53-183)||(35205244-35205373)
chr1 (57-183)||(35476641-35476767)
chr1 (53-171)||(34309696-34309814)
chr1 (1-184)||(35208374-35208559)
chr1 (21-112)||(35212254-35212345)
chr1 (54-128)||(35248588-35248662)
chr1 (1-177)||(19266494-19266670)
chr1 (12-184)||(35474177-35474347)
chr1 (64-110)||(35252398-35252444)
chr1 (68-177)||(19267480-19267591)
[»] chr3 (4 HSPs)
chr3 (54-179)||(899427-899552)
chr3 (53-179)||(19246719-19246845)
chr3 (68-179)||(23332100-23332211)
chr3 (64-141)||(53924083-53924160)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 38632125 - 38632417
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38632125 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 38632224  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaattttttgcaagataaa 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38632225 gacaaggcaagagtgtctatccttccacgaatttcaagcgaaaacacatcacgaagctcagcaacttcagggaacctgtccaaattttttgcaagataaa 38632324  T
Q  201 aatacaggaacttagcaaaaagttgaaagtaattcataagatcacaaatggatagtatttatacatgtgtgcttagtagttaaagccattgat 293  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38632325 aatacaggaacttagcaaaaagttaaaagtaattcataagatcacaaatggatagtatttatacatgtgtgcttagtagttaaagccattgat 38632417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 290
Target Start/End: Original strand, 38634871 - 38635165
Alignment:
Q  11 acaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaa 110  Q
    |||||||||||||||  || | ||  |||||  |||| |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||  ||    
T  38634871 acaccaactgataacctcataagacagttcttaaatcgttgagcatcaatcatctggaacacaagataagctacatactgagtatttcgggacaagtaaa 38634970  T
Q  111 gagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaatttt-----------ttgcaa----- 194  Q
    |||||| ||| |||||||||||||||||| ||||| ||| ||||| |||| ||||||||||||||||||||||| |||           ||||||         
T  38634971 gagtgtttattcttccacgaatttcaagcgaaaacgcattacgaatctcaacaacttcagggaacctgtccaaaatttgtgcacaaaagttgcaatgata 38635070  T
Q  195 -gataaaaatacaggaacttagcaaaaagttgaaagtaattcataagatcacaaatggatagtatttatacatgtgtgcttagtagttaaagccatt 290  Q
     ||||  | |||| ||||| || |||||||||||||||||||||| ||||||||||||  ||| ||||||||||||| || ||||||||||||||||    
T  38635071 tgatatgattacaagaactgagaaaaaagttgaaagtaattcataggatcacaaatgg--agtgtttatacatgtgtactgagtagttaaagccatt 38635165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 35190610 - 35190793
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    |||||||| |||||||||||||||||| | ||||  |||||  |||||||  |||||||||| ||||||||||||||||||  ||||||| |||||| |     
T  35190610 gccaccttcgacaccaactgataactctataggacagttctgaaatccttcggcatcaatcatcttgaacacaagataagccgcatactgggtatttggg 35190709  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 184  Q
    ||||||||||| || | |||| | |||||||| |||||| |  |||| ||| ||||||||||||||||||||||||||||||||    
T  35190710 gacaaggcaagggtatttatcatcccacgaatatcaagccaccacacttcaagaagctcagcaacttcagggaacctgtccaaa 35190793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 35295783 - 35295600
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    |||||||| |||||||||||||||||| ||||||   || |  |||||| | |||| ||||| ||||||||||||||||||| |||| ||||||||| |     
T  35295783 gccaccttcgacaccaactgataactcaacaggacaattttgaaatcctcgggcattaatcatcttgaacacaagataagctgcatattgagtatttggg 35295684  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 184  Q
    ||||||||| | |||| |||| | ||||||||||||||| | | |||| ||||||||||||||||||| |||||||||||||||    
T  35295683 gacaaggcaggggtgtttatcatcccacgaatttcaagccatagcacagcacgaagctcagcaacttcggggaacctgtccaaa 35295600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 35225181 - 35225373
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    |||||||| || ||||||||||||||||||||||  || ||| ||||| |  ||||  |||| ||||||||||||||||| ||||||| |||||||| |     
T  35225181 gccaccttcgataccaactgataactccacaggaaagtactcaaatccataggcattgatcatcttgaacacaagataagttacataccgagtatttggg 35225280  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaattttttgca 193  Q
    ||||||||||| |||| || | | ||||||||||||||| || |||||| | |||| || ||||||||||| || ||||||||| ||| ||||    
T  35225281 gacaaggcaagggtgtttaacttcccacgaatttcaagccaacacacatgaagaagttcggcaacttcaggaaatctgtccaaaatttgtgca 35225373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 45525735 - 45525917
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    |||||||| |||||| || ||||| ||||||||| || |||| || || |   |||||||||| |||||||| ||||||||| |||||||||||||| ||    
T  45525735 gccaccttcgacaccgacagataaatccacaggaagggtctcaaacccatagccatcaatcaatttgaacacgagataagctgcatactgagtatttgga 45525834  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaa 183  Q
    |||||||||||| |||  ||| | ||||||||||| ||| |  |||||  |||||| | ||||||||| ||||||||||||||    
T  45525835 gacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacgaagattagcaacttcggggaacctgtccaa 45525917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 45531845 - 45532027
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    ||||||||||||||| || ||||| ||||||||| ||||||| || || |  | ||||||||  |||||||||||||||||| |||| ||||||||| |     
T  45531845 gccacctttgacaccgacagataaatccacaggaaggttctcaaacccataggaatcaatcattttgaacacaagataagctgcatattgagtatttggg 45531944  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaa 183  Q
    |||||||||||| |||  ||| | ||||||||||| ||| |  |||||  || ||| | ||||||||| ||||||||||||||    
T  45531945 gacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacaaagtttagcaacttcggggaacctgtccaa 45532027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 35219391 - 35219521
Alignment:
Q  54 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 153  Q
    ||||||||| ||||||||||||||||| | ||||| |||||||| ||||||||| ||| |||| |||| | |||| ||||||||||  | |||  | | |    
T  35219391 catcaatcatcttgaacacaagataagttgcatacagagtatttggagacaaggtaagggtgtttatcttgccacaaatttcaagccgacacatgttaag 35219490  T
Q  154 aagctcagcaacttcagggaacctgtccaaa 184  Q
    ||||||| |||||||||||||||||||||||    
T  35219491 aagctcaacaacttcagggaacctgtccaaa 35219521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 35216208 - 35216308
Alignment:
Q  11 acaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaa 110  Q
    ||||||||||||||||||| ||||  |||||  |||||||  |||||||||| ||| ||||||||||||| | |||||||||||||| ||||||||||||    
T  35216208 acaccaactgataactccagaggacagttctgaaatccttcggcatcaatcatcttaaacacaagataagttgcatactgagtatttggagacaaggcaa 35216307  T
Q  111 g 111  Q
    |    
T  35216308 g 35216308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 35270683 - 35270866
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    |||||||| ||||||||||||||| ||| ||||| ||||||  |||||   ||||| |||||  |||||||||| ||||||| |||| ||||||||| |     
T  35270683 gccaccttcgacaccaactgataaatccgcaggacggttctgaaatcccgaagcattaatcattttgaacacaacataagctgcatattgagtatttggg 35270782  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 184  Q
    |||| | | |  |||| ||||   ||| ||||||||||| || ||||||||  ||||| ||| |||||||||||||||||||||    
T  35270783 gacaggacgatggtgtttatcacaccatgaatttcaagccaacacacatcaacaagcttagcgacttcagggaacctgtccaaa 35270866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 35147596 - 35147773
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    |||||||| |||||||||||||||||| | ||||  |||||  |||||||  || ||||||| ||||||||||||||||||  ||||||| |||||| |     
T  35147596 gccaccttcgacaccaactgataactctataggacagttctgaaatccttcggcttcaatcatcttgaacacaagataagccgcatactgggtatttggg 35147695  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctg 178  Q
    ||||||  ||| |||| |||| | |||| ||| |||||| |  |||| | | |||| | |||||||||||||||||||    
T  35147696 gacaagctaagggtgtttatcgtcccactaatatcaagccaccacactttaagaagttgagcaacttcagggaacctg 35147773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 8639228 - 8639367
Alignment:
Q  54 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 153  Q
    ||||||||| ||||||||||||||||| | ||||   ||||||  | ||||||||| | |||| |||| |||||||||||| ||||  | |||||| | |    
T  8639228 catcaatcatcttgaacacaagataagttgcatatgtagtattcggggacaaggcacgggtgtttatctttccacgaattttaagccgacacacattaag 8639327  T
Q  154 aagctcagcaacttcagggaacctgtccaaattttttgca 193  Q
    || |||| ||||||||||||||||||||||| ||| ||||    
T  8639328 aatctcaacaacttcagggaacctgtccaaaatttgtgca 8639367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 35200235 - 35200362
Alignment:
Q  57 caatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaag 156  Q
    |||||| ||||||||||||||||||| |||||||||||||| | ||||| |||||  ||| |||| | |||| ||| | |||| || | ||| || ||||    
T  35200235 caatcatcttgaacacaagataagctgcatactgagtatttggggacaatgcaagcatgtttatcatcccactaatatgaagccaacaaacaacaagaag 35200334  T
Q  157 ctcagcaacttcagggaacctgtccaaa 184  Q
    |||||| |||||||||||||| ||||||    
T  35200335 ctcagcgacttcagggaacctatccaaa 35200362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 35263258 - 35263441
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    |||||||| ||||| ||||||||| ||||||||| ||||||  |||||   |||||||||||  |||||||||| ||||||| |||| ||||||| | |     
T  35263258 gccaccttcgacacaaactgataagtccacaggacggttctgaaatccccaagcatcaatcattttgaacacaacataagctgcatattgagtatatggg 35263357  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 184  Q
    ||||   |||  |||| ||||   ||||||||||||||| || | || |||  ||||| |||||||||||||||||||| ||||    
T  35263358 gacagaacaatggtgtttatcacaccacgaatttcaagccaacatacgtcaacaagcttagcaacttcagggaacctgttcaaa 35263441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 35205244 - 35205373
Alignment:
Q  53 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 152  Q
    |||||||||| ||||||||||||||||||| |||| ||||||||| ||||||| |||||| |||  ||| | ||||||||||| ||| |  |||||| ||    
T  35205244 gcatcaatcatcttgaacacaagataagctgcatattgagtatttggagacaatgcaagattgttaatcatcccacgaatttcgagccaccacacatgac 35205343  T
Q  153 gaagctcagcaacttcagggaacctgtccaa 183  Q
    |||| | |||||| || |||| |||||||||    
T  35205344 gaagataagcaac-tcggggagcctgtccaa 35205373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 35476641 - 35476767
Alignment:
Q  57 caatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaag 156  Q
    |||||| ||||||||||||||||||  |||||||||||||| | |||||||||   |||| |||| ||||| ||||||||||| ||  ||||| | ||||    
T  35476641 caatcatcttgaacacaagataagccgcatactgagtatttggggacaaggcattggtgtttatctttccatgaatttcaagccaacgcacatgaagaag 35476740  T
Q  157 ctcagcaacttcagggaacctgtccaa 183  Q
    || ||||||||  |||||||| |||||    
T  35476741 cttagcaactttggggaacctatccaa 35476767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 34309696 - 34309814
Alignment:
Q  53 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 152  Q
    |||| ||||| ||||||||| ||||||||  |||||||||||||| | ||||||| ||||||||  ||| | ||||||||||||||| |  |||||  ||    
T  34309696 gcattaatcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacgaatttcaagcgagtacacaagac 34309795  T
Q  153 gaagctcagcaacttcagg 171  Q
     ||||| ||||||||||||    
T  34309796 aaagcttagcaacttcagg 34309814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 35208374 - 35208559
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtattt-cg 99  Q
    |||||||  |||||||||||||||||||| ||||  |||||  |||||||  |||||||||| |||||||||||| ||| || ||| ||  ||||||  |    
T  35208374 gccacctccgacaccaactgataactccataggacagttctgaaatccttcggcatcaatcatcttgaacacaagttaaactgcatccttggtatttggg 35208473  T
Q  100 agacaaggcaagagtgtctatccttccac-gaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 184  Q
     |||||||||||  | | |||| | | || |||| |||||| |  |||| | | ||||||||||||||||||||||||||||||||    
T  35208474 ggacaaggcaaggatatttatcatcctacggaatatcaagccaccacactttaagaagctcagcaacttcagggaacctgtccaaa 35208559  T

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Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 35212254 - 35212345
Alignment:
Q  21 ataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaaga 112  Q
    |||| ||||||||| |||||   ||||| || |||||||||| ||||||||||||||||||  ||||  |||||||| ||||||||||||||    
T  35212254 ataagtccacaggaaggttcctgaatccatgggcatcaatcatcttgaacacaagataagccgcatagcgagtatttggagacaaggcaaga 35212345  T

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Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 35248588 - 35248662
Alignment:
Q  54 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccac 128  Q
    ||||||||| ||||||||||||||||||| |||||||||||||| | |||||| |||  |||| |||||| ||||    
T  35248588 catcaatcaccttgaacacaagataagctgcatactgagtatttggggacaagtcaatggtgtttatcctaccac 35248662  T

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Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 19266494 - 19266670
Alignment:
Q  1 gccacctttgacaccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcga 100  Q
    |||||| ||||||||||||||||||  |||  ||| |||||  ||| |||||||| ||||||  |||||||||||| ||||| ||||| | |||||| |     
T  19266494 gccaccattgacaccaactgataacatcacgagatagttcttaaattcttgagcagcaatcatattgaacacaagaaaagctgcatacagtgtattttgg 19266593  T
Q  101 gacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacct 177  Q
     ||||| | || |||| |||||| | || |||||  ||| || |||||| | ||| |||| |||||| |||||||||    
T  19266594 aacaagccgagggtgtttatcctccgacaaatttagagcgaatacacatgatgaatctcaacaactttagggaacct 19266670  T

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Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 35474177 - 35474347
Alignment:
Q  12 caccaactgataactccacaggatggttctccaatccttgagcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaag 111  Q
    ||||||| |||||||||||| ||| |||||| ||||     |||| ||||| ||||||||||||||||| | ||||  | |||| | | |||||||||||    
T  35474177 caccaacagataactccacaagatagttctcaaatcgagaggcattaatcatcttgaacacaagataagttccatatagtgtatgtggggacaaggcaag 35474276  T
Q  112 agtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaacttcagggaacctgtccaaa 184  Q
     |||| |||| | |||||||| ||||||  || ||||| | |||||||| ||| ||||||| |||||||||||    
T  35474277 ggtgtttatcttcccacgaatctcaagc-caaccacattaagaagctcaacaaattcaggg-acctgtccaaa 35474347  T

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Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 35252398 - 35252444
Alignment:
Q  64 cttgaacacaagataagctacatactgagtatttcgagacaaggcaa 110  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||    
T  35252398 cttgaacacaagatacgctacatactgagtatttggggacaaggcaa 35252444  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 177
Target Start/End: Complemental strand, 19267591 - 19267480
Alignment:
Q  68 aacacaagataagcta--catactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaac 165  Q
    |||||||||||||||   ||||| ||||| || | |||||||  || |||| ||||||||||||||||||| |  || |||||| | ||| |||| |||     
T  19267591 aacacaagataagctctgcatacagagtaatttgggacaaggtgagggtgtttatccttccacgaatttcatgtgaatacacatgaagaatctcaacaat 19267492  T
Q  166 ttcagggaacct 177  Q
    ||||||||||||    
T  19267491 ttcagggaacct 19267480  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 179
Target Start/End: Complemental strand, 899552 - 899427
Alignment:
Q  54 catcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacg 153  Q
    ||||||||| ||||||||||||||||||  |||||  ||||||| | ||||||| || |||||  ||  ||||||||||||||||| | ||||||  ||     
T  899552 catcaatcatcttgaacacaagataagccgcataccaagtattttgggacaaggaaaaagtgttaattattccacgaatttcaagcgagaacacaagaca 899453  T
Q  154 aagctcagcaacttcagggaacctgt 179  Q
    ||||| | | |||||||| |||||||    
T  899452 aagcttaacgacttcaggaaacctgt 899427  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 19246845 - 19246719
Alignment:
Q  53 gcatcaatcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcac 152  Q
    |||||||| | |||||| || ||||||||| |||||||||||||| | ||||||| |||||| |  ||  | |||||||||||| || | ||||||  ||    
T  19246845 gcatcaattatcttgaagacgagataagctgcatactgagtatttggggacaaggaaagagtcttaataataccacgaatttcatgcgagaacacaagac 19246746  T
Q  153 gaagctcagcaacttcagggaacctgt 179  Q
      |||| ||||||||| ||||||||||    
T  19246745 tgagcttagcaacttccgggaacctgt 19246719  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 23332100 - 23332211
Alignment:
Q  68 aacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaaaaacacatcacgaagctcagcaactt 167  Q
    ||||| || |||||| |||||||||||||| | ||||| | ||||||||  ||  | |||| ||||||| || | |||| |  |||||||| ||||||||    
T  23332100 aacacgaggtaagctgcatactgagtatttggggacaatgaaagagtgttaataatcccacaaatttcatgcgagaacaaaagacgaagcttagcaactt 23332199  T
Q  168 cagggaacctgt 179  Q
    ||||||||||||    
T  23332200 cagggaacctgt 23332211  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 53924160 - 53924083
Alignment:
Q  64 cttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcaa 141  Q
    ||||||||||||||||||  ||||| |||||||| | |||||| |||| |||| |||| ||||  ||| |||||||||    
T  53924160 cttgaacacaagataagccgcataccgagtatttggggacaagacaagggtgtttatcattccttgaaattcaagcaa 53924083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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