View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10389_low_2 (Length: 557)

Name: NF10389_low_2
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10389_low_2
NF10389_low_2
[»] chr1 (2 HSPs)
chr1 (18-539)||(28843638-28844160)
chr1 (139-185)||(42180144-42180190)
[»] chr3 (2 HSPs)
chr3 (139-178)||(8156217-8156256)
chr3 (139-185)||(29067288-29067334)
[»] scaffold0115 (1 HSPs)
scaffold0115 (139-179)||(35144-35184)
[»] chr2 (1 HSPs)
chr2 (129-185)||(1404777-1404833)
[»] chr7 (3 HSPs)
chr7 (139-185)||(21846504-21846550)
chr7 (139-185)||(27221422-27221468)
chr7 (139-179)||(5058533-5058573)
[»] chr6 (2 HSPs)
chr6 (139-185)||(7918460-7918506)
chr6 (139-185)||(17543819-17543865)
[»] chr5 (2 HSPs)
chr5 (139-185)||(19042468-19042514)
chr5 (139-185)||(43234872-43234918)
[»] chr4 (1 HSPs)
chr4 (140-185)||(46664436-46664481)


Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Complemental strand, 28844160 - 28843638
Alignment:
Q  18 aaatccattttaaagcagttaa-gaacccacatgcatatgcatccctctcatctattgatcaaagcggagatatacatactatacaatttgagcaagcac 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28844160 aaatccattttaaagcagttaaagaacccacatgcatatgcatccctctcatctattgatcaaagcggagatatacatactatacaatttgagcaagcac 28844061  T
Q  117 aaaacaacattgataatcatctttgtcaaaatctcaacttaaattctaaaattcagaattttgtgacttgactcgtgcacgttatgacatctctctttaa 216  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  28844060 aaaacaacattgataatcatctttgtcagaatcttaacttaaattctaaaatttagaattttgtgacttgactcgtgcacgttatgacctctctctttaa 28843961  T
Q  217 acttaaaggttacaaattaatcatcacccctttgagccaattttcaatgtccaacatatccaaccatgttgagcaataaccatgttctcttctgacgtgt 316  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28843960 gcttaaaggttacaaattaatcatcacccctttgagccaattttcaatgtccaacatatccaaccatgttgagcaataaccatgttctcttctgacgtgt 28843861  T
Q  317 ttctctaaactttgacatttgtactacttcataccataaaatagtattaatagccatcattgatctttattcctcgttctaaattttgtagctacaaaga 416  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28843860 tcctctaaactttgacatttgtactactccataccataaaatagtattaatagccatcattgatctttattcctcgttctaaattttgtagttacaaaga 28843761  T
Q  417 aataatctataaaaacttgctgaacagagggaacgatctgctttaaagcatgctaaagatcaactttctcataacaattgacacttattgaacaatgaac 516  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28843760 aataatctataaaaacttgctgaacagagggaacaatcagctttaaagcatgctaaagatcaactttctcataacaattgacacttattgaacaatgaac 28843661  T
Q  517 tgattgggggcatgttattttcc 539  Q
    |||||||| ||||||||||||||    
T  28843660 tgattgggtgcatgttattttcc 28843638  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 42180190 - 42180144
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    ||||||||||| |||||||||||||||||||||| |||||| |||||    
T  42180190 ttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactt 42180144  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 8156256 - 8156217
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaatttt 178  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  8156256 ttgtcaaaatcccaacttaaattctaaaattcagaatttt 8156217  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 29067288 - 29067334
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||    
T  29067288 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 29067334  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 35184 - 35144
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttg 179  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  35184 ttgtcaaaatctcgacttaaattctaaaattcataattttg 35144  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 1404777 - 1404833
Alignment:
Q  129 ataatcatctttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    ||||||||  ||||||||||| | ||||||||||||||||| || ||||||||||||    
T  1404777 ataatcattgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactt 1404833  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 21846550 - 21846504
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||    
T  21846550 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 21846504  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 27221422 - 27221468
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    |||| |||||| |||||||||||||||||||||| |||||| |||||    
T  27221422 ttgttaaaatcccaacttaaattctaaaattcaggattttgcgactt 27221468  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 5058533 - 5058573
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttg 179  Q
    ||||||||||| | |||||||| ||||||||||||||||||    
T  5058533 ttgtcaaaatcccgacttaaatcctaaaattcagaattttg 5058573  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 7918506 - 7918460
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    ||||||||||| | |||||||||||||||||||| |||||| |||||    
T  7918506 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactt 7918460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 17543865 - 17543819
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    ||||||||||||| |||||||| ||||||||||| |||||| |||||    
T  17543865 ttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgactt 17543819  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 19042514 - 19042468
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    ||||||||||| ||||||||||||||||||| |  ||||||||||||    
T  19042514 ttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactt 19042468  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 43234872 - 43234918
Alignment:
Q  139 ttgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    ||||||||||| |||||||||| ||||||||||| |||||| |||||    
T  43234872 ttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactt 43234918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 46664481 - 46664436
Alignment:
Q  140 tgtcaaaatctcaacttaaattctaaaattcagaattttgtgactt 185  Q
    ||||||||| |||||||||||  ||||||||||||||||| |||||    
T  46664481 tgtcaaaatttcaacttaaatcttaaaattcagaattttgcgactt 46664436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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