View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10389_low_23 (Length: 247)
Name: NF10389_low_23
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10389_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 27448588 - 27448809
Alignment:
| Q |
10 |
gcagagaaatctaagagatgttgctgcgttgtatggatgcgagccaactttggaagctgttgaagaatacagaagaatctcaggattagaatctattagt |
109 |
Q |
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| T |
27448588 |
gcagagaaatctaagagatgttgctgagttgtatggatgcgagccaactttggaagctgttgaagaatacagaagaatttcaggattagaatctgttagt |
27448687 |
T |
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| Q |
110 |
tcaacatgcttcaaagctgcaagaatctctacagtaatcttcgatgatgggatacatttggacaaaatacttgatactgaatggcacaggagttttactc |
209 |
Q |
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| T |
27448688 |
tcaacatgcttcaaagctgcaagaatctctacagtgatcttcgatgatgggatacatttggacaaaatacttgatactgaatggcacaggagttttactc |
27448787 |
T |
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| Q |
210 |
ctcaggttgctagactcgtgag |
231 |
Q |
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| T |
27448788 |
ctcatgtcgctagactcgtgag |
27448809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 27402893 - 27403087
Alignment:
| Q |
11 |
cagagaaatctaagagatgttgctgcgttgtatggatgcgagccaactttggaagctgttgaagaatacagaagaatctcaggattagaatctatta-gt |
109 |
Q |
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| T |
27402893 |
cagagaaatctaagggatttagctgagctatatggatgtgagttatctttgcaaggtgttgaagaacaccgaaaagtctctggattggaat-tgtcatgt |
27402991 |
T |
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| Q |
110 |
tcaacatgcttcaaagctgcaagaatctctacagtaatcttcgatgatgggatacatttggacaaaatacttgatactgaatggcacaggagtttt |
205 |
Q |
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| T |
27402992 |
tcaacatgtttcaaagctgcaagaatctctgctatactcatggatgatgggtttgaattggacaaaatgcatgatatagaatggcataagagtttt |
27403087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 206
Target Start/End: Original strand, 27424007 - 27424105
Alignment:
| Q |
108 |
gttcaacatgcttcaaagctgcaagaatctctacagtaatcttcgatgatgggatacatttggacaaaatacttgatactgaatggcacaggagtttta |
206 |
Q |
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|||||||||| ||||||||||||||||||||| | || || | ||||||||| || | ||||||||||| ||||| |||||||| | |||||||| |
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| T |
27424007 |
gttcaacatgtttcaaagctgcaagaatctctgctatactcatggatgatgggttagaattggacaaaatgtatgatatagaatggcataagagtttta |
27424105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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