View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10389_low_28 (Length: 231)
Name: NF10389_low_28
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10389_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 30730943 - 30731146
Alignment:
| Q |
11 |
ggagcacagaccaccgatggggtatgtattatgtcaactagaagaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttct |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30730943 |
ggagaacagaccaccgatggggtatgtattatgtcaactagaagaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttct |
30731042 |
T |
|
| Q |
111 |
atacactcca--gtaggaagtggatttacggatgaaattgaagatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcat |
208 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30731043 |
attcactccagtgtaggaagtggatttacggatgaaattgaagatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcat |
30731142 |
T |
|
| Q |
209 |
ttta |
212 |
Q |
| |
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|||| |
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|
| T |
30731143 |
ttta |
30731146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 14705126 - 14705329
Alignment:
| Q |
11 |
ggagcacagaccaccgatggggtatgtattatgtcaactagaagaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttct |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14705126 |
ggagaacagaccaccgatggggtatgtattatgtcaactagaagaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttct |
14705225 |
T |
|
| Q |
111 |
atacactcca--gtaggaagtggatttacggatgaaattgaagatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcat |
208 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14705226 |
attcactccagtgtaggaagtggatttacggatgaaattgaagatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcat |
14705325 |
T |
|
| Q |
209 |
ttta |
212 |
Q |
| |
|
|||| |
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| T |
14705326 |
ttta |
14705329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 14670877 - 14670677
Alignment:
| Q |
11 |
ggagcacagaccaccgatggggtatgtattatgtcaactagaagaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttct |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14670877 |
ggagaacagaccaccgatggggtatgtattatgtcaactagaagaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttct |
14670778 |
T |
|
| Q |
111 |
atacactcca--gtaggaagtggatttacggatgaaattgaagatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcat |
208 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14670777 |
attcactccagtgtaggaagtggatttacggatgaaattgaagatgttgtt---aaccatagcctcctaattcaacaactcatttgttaaagttggtcat |
14670681 |
T |
|
| Q |
209 |
ttta |
212 |
Q |
| |
|
|||| |
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|
| T |
14670680 |
ttta |
14670677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 14685436 - 14685639
Alignment:
| Q |
11 |
ggagcacagaccaccgatggggtatgtattatgtcaactagaagaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttct |
110 |
Q |
| |
|
|||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14685436 |
ggagaacagaccatcaatggggtatgtgttatgtcaactagaagaggctctccatcttgagttggcatcacatgtttcgaatgagaatgaggattcttct |
14685535 |
T |
|
| Q |
111 |
atacactcca--gtaggaagtggatttacggatgaaattgaagatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggtcat |
208 |
Q |
| |
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|| | ||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14685536 |
attcgctccagtgtatgaagtggatttatggatgaaattgaagatgttgtttgaaaccatagcctcctaatttaacaactcatttgttaaagttggttat |
14685635 |
T |
|
| Q |
209 |
ttta |
212 |
Q |
| |
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|||| |
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|
| T |
14685636 |
ttta |
14685639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 24059153 - 24059229
Alignment:
| Q |
16 |
acagaccaccgatggggtatgtattatgtcaactagaagaggctctccatcttgagttggcatcacatgtttcgaat |
92 |
Q |
| |
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|||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
24059153 |
acagaccatcaatggggtacatattatgtcaactagaagaggctctccatcttgagttggcatcagatgttttgaat |
24059229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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