View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10389_low_29 (Length: 227)

Name: NF10389_low_29
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10389_low_29
NF10389_low_29
[»] chr1 (2 HSPs)
chr1 (1-214)||(28843417-28843626)
chr1 (113-142)||(30602335-30602364)
[»] chr3 (1 HSPs)
chr3 (116-206)||(22312204-22312295)
[»] chr4 (5 HSPs)
chr4 (175-214)||(34542410-34542449)
chr4 (108-142)||(25050079-25050113)
chr4 (114-142)||(18523317-18523345)
chr4 (114-150)||(36165558-36165594)
chr4 (114-142)||(41389526-41389554)
[»] chr7 (3 HSPs)
chr7 (161-206)||(31260835-31260880)
chr7 (114-142)||(5473272-5473300)
chr7 (114-150)||(33804213-33804249)
[»] scaffold0557 (1 HSPs)
scaffold0557 (114-142)||(4632-4660)
[»] chr5 (1 HSPs)
chr5 (114-142)||(31540330-31540358)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 28843626 - 28843417
Alignment:
Q  1 acaacatatgcaacctgtatgacaaaaaacgaccaatcggccatatgttcaaaatcaaagaggtgaacatgcacaactttgtttattgcttcacaatgga 100  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  28843626 acaacatatgcaacctgtatgacaaaaaacga------ggccatatgttcaaaatcacagaggtgaacatgcacaactttgtttattgcttcacgatgga 28843533  T
Q  101 acaaaggtgaaattgttgaagttggttttgaagttgtttgtaattcg--tttagtttcacaatgctcaagttttcggaccgttgagtgtataaatatgct 198  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |  ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  28843532 acaaaggtgaaattgttgaagttgattttgaagttgtttgtagtttgtttttagtttcacatcgctcaagttttcggaccgttgagtgtataaatatgct 28843433  T
Q  199 tgagtatcattatcct 214  Q
    ||||||||||||||||    
T  28843432 tgagtatcattatcct 28843417  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 142
Target Start/End: Original strand, 30602335 - 30602364
Alignment:
Q  113 ttgttgaagttggttttgaagttgtttgta 142  Q
    ||||||||||||||||||||||||||||||    
T  30602335 ttgttgaagttggttttgaagttgtttgta 30602364  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 22312204 - 22312295
Alignment:
Q  116 ttgaagttggttttgaagttgtttgtaattcgt--ttagtttcacaatgctcaagttttcggaccgttgagtgtataaatatgcttgagtatc 206  Q
    ||||||||||||||||||||||||||| || ||  ||||| ||||||||||| |||||   ||| ||||||| |||||||||| |||||||||    
T  22312204 ttgaagttggttttgaagttgtttgtagtttgttattagtctcacaatgctc-agtttcttgactgttgagtatataaatatgtttgagtatc 22312295  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 34542449 - 34542410
Alignment:
Q  175 gaccgttgagtgtataaatatgcttgagtatcattatcct 214  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  34542449 gaccgttgagtgtataaatatgtttgagtatcatcatcct 34542410  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 25050079 - 25050113
Alignment:
Q  108 tgaaattgttgaagttggttttgaagttgtttgta 142  Q
    |||| ||||||||||||||||||||||||||||||    
T  25050079 tgaatttgttgaagttggttttgaagttgtttgta 25050113  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 18523345 - 18523317
Alignment:
Q  114 tgttgaagttggttttgaagttgtttgta 142  Q
    |||||||||||||||||||||||||||||    
T  18523345 tgttgaagttggttttgaagttgtttgta 18523317  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 36165594 - 36165558
Alignment:
Q  114 tgttgaagttggttttgaagttgtttgtaattcgttt 150  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  36165594 tgttgaagttagttttgaagttgtttgtaatttgttt 36165558  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 41389554 - 41389526
Alignment:
Q  114 tgttgaagttggttttgaagttgtttgta 142  Q
    |||||||||||||||||||||||||||||    
T  41389554 tgttgaagttggttttgaagttgtttgta 41389526  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 31260880 - 31260835
Alignment:
Q  161 tgctcaagttttcggaccgttgagtgtataaatatgcttgagtatc 206  Q
    |||||||||| |||||||||||||| |||||||||| |||| ||||    
T  31260880 tgctcaagttctcggaccgttgagtttataaatatgtttgaatatc 31260835  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 5473272 - 5473300
Alignment:
Q  114 tgttgaagttggttttgaagttgtttgta 142  Q
    |||||||||||||||||||||||||||||    
T  5473272 tgttgaagttggttttgaagttgtttgta 5473300  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 33804249 - 33804213
Alignment:
Q  114 tgttgaagttggttttgaagttgtttgtaattcgttt 150  Q
    ||||| ||||||||||||||||||||||| |||||||    
T  33804249 tgttggagttggttttgaagttgtttgtagttcgttt 33804213  T

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Target: scaffold0557 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 4632 - 4660
Alignment:
Q  114 tgttgaagttggttttgaagttgtttgta 142  Q
    |||||||||||||||||||||||||||||    
T  4632 tgttgaagttggttttgaagttgtttgta 4660  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 31540358 - 31540330
Alignment:
Q  114 tgttgaagttggttttgaagttgtttgta 142  Q
    |||||||||||||||||||||||||||||    
T  31540358 tgttgaagttggttttgaagttgtttgta 31540330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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