View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10389_low_3 (Length: 511)
Name: NF10389_low_3
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10389_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 7537960 - 7537679
Alignment:
| Q |
18 |
ctatcaaccatccatttaataaaaactaatccatgtacactatagttatcttccaaaccgaaagtgagatatttgtcctatgtcatacgtgtttaactct |
117 |
Q |
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| T |
7537960 |
ctatcaaccatccatttaataaaaactaatccatgtacactatagttatcttccaaaccgaaagtgagatatttgtcctatgtcatacgtgtttaactct |
7537861 |
T |
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| Q |
118 |
tattatgtacgatggaatttaaggattataaaattgaggaattaataataacatcaaaggtttttcaccttaagtaataaaaacatcaaaattagtttac |
217 |
Q |
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| T |
7537860 |
tattatgtacgatggaatttaaggattataaaattgaggaat----aataacatcaaaggtttttcaccttaagtaataaaaacatcaaaattagtttac |
7537765 |
T |
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| Q |
218 |
caactaaggtccccttctttaatggctatgtcatgaatagtttccgttcgattcgccacaaacaaggctgcatgcatatacttatg |
303 |
Q |
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| T |
7537764 |
caactaaggtccccttctttaatggctatgtcatgaatagtttccgttcgattcgccacaaacaaggctgcatgcatatacttatg |
7537679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 369 - 497
Target Start/End: Complemental strand, 7537612 - 7537484
Alignment:
| Q |
369 |
ttgtcaagaaaccctaataaaatttaagaatattgacaaattttataggtgtgttctattactcgaaatattttaacaaagatcgactcaagtagaagtt |
468 |
Q |
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| T |
7537612 |
ttgtcaagaaaccctaataaaatttaagaatattgacaaattttataggtgggttctattactcgaaatattttaacaaagatcgactcaagtagaagtt |
7537513 |
T |
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| Q |
469 |
cacaatcatctttgctcttttgaggtatt |
497 |
Q |
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| T |
7537512 |
cacaatcatctttgctcttttaaggtatt |
7537484 |
T |
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