View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10389_low_4 (Length: 509)
Name: NF10389_low_4
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10389_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 13651022 - 13651491
Alignment:
| Q |
19 |
cacagagcagggattagaaaattaagaggatatactgtctctgatcaccaacaatttgaaaatatcatagaaaagttaaggattaacttgttgaagttag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13651022 |
cacagagcagggattagaaaattaagaggatatactgtctctgatcaccaacaatttgaaaatatcatagaaaagttaaggattaacttgttgaagttag |
13651121 |
T |
|
| Q |
119 |
caattaaacgcagtgtgatcctaagtccaatactacttttaagtcttcatttcaaataagataattcctagta-aaaagagcttgtgaaaaaacagtaat |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13651122 |
caattaaacgcagtgttatcctaagtccaatactacttttaagtcttcatttcaaataagataattcctagtataaaagagcttgtgaaaaaacagtaat |
13651221 |
T |
|
| Q |
218 |
ttggtgtagtatatgaaatgaaatcaaagtgttaaaataaatctttgtgacatgttttgacataatataatgaggaacgttaaaataaaaagtggagaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
13651222 |
ttggtgtagtatatgaaatgaaatcaaagtgttaaaataaatctttgtgacatgttttgacataatataatgag-aactttaaaataaaaagtggagaaa |
13651320 |
T |
|
| Q |
318 |
acagttctgattgagagagatatctctactgttctgtttgatattcagccatcaataaatacataacacaataagtttgtcattactacaagtactgttt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13651321 |
acagttctgattgagagagatatctctactgttctgtttgatattcagccagcaataaatacataacacaataagtttgtcattactacaagtactgttt |
13651420 |
T |
|
| Q |
418 |
aattaatccttagcgtcgtctactcgttttaatttctgaaactgagactagtggactattcggcaagtact |
488 |
Q |
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| T |
13651421 |
aattaatccttagcgtcgtctactcgttttaatttctgaaactgagactaggggactatttgccaagtact |
13651491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Original strand, 13709665 - 13710134
Alignment:
| Q |
19 |
cacagagcagggattagaaaattaagaggatatactgtctctgatcaccaacaatttgaaaatatcatagaaaagttaaggattaacttgttgaagttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13709665 |
cacagagcagggattagaaaattaagaggatatactgtctctgatcaccaacaatttgaaaatatcatagaaaagttaaggattaacttgttgaagttag |
13709764 |
T |
|
| Q |
119 |
caattaaacgcagtgtgatcctaagtccaatactacttttaagtcttcatttcaaataagataattcctagta-aaaagagcttgtgaaaaaacagtaat |
217 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13709765 |
caattaaacgcagtgttatcctaagtccaatactacttttaagtcttcatttcaaataagataattcctagtataaaagagcttgtgaaaaaacagtaat |
13709864 |
T |
|
| Q |
218 |
ttggtgtagtatatgaaatgaaatcaaagtgttaaaataaatctttgtgacatgttttgacataatataatgaggaacgttaaaataaaaagtggagaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
13709865 |
ttggtgtagtatatgaaatgaaatcaaagtgttaaaataaatctttgtgacatgttttgacataatataatgag-aactttaaaataaaaagtggagaaa |
13709963 |
T |
|
| Q |
318 |
acagttctgattgagagagatatctctactgttctgtttgatattcagccatcaataaatacataacacaataagtttgtcattactacaagtactgttt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13709964 |
acagttctgattgagagagatatctctactgttctgtttgatattcagccagcaataaatacataacacaataagtttgtcattactacaagtactgttt |
13710063 |
T |
|
| Q |
418 |
aattaatccttagcgtcgtctactcgttttaatttctgaaactgagactagtggactattcggcaagtact |
488 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| |
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|
| T |
13710064 |
aattaatccttagcgtcgtctactcgttttaatttctgaaactgagactaggggactatttgccaagtact |
13710134 |
T |
|
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