View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10389_low_5 (Length: 443)

Name: NF10389_low_5
Description: NF10389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10389_low_5
NF10389_low_5
[»] chr3 (7 HSPs)
chr3 (20-261)||(26225271-26225500)
chr3 (359-432)||(26225098-26225171)
chr3 (183-259)||(41799075-41799151)
chr3 (359-434)||(30353210-30353285)
chr3 (359-434)||(41799251-41799326)
chr3 (197-259)||(30353029-30353091)
chr3 (197-230)||(49393340-49393373)
[»] chr6 (1 HSPs)
chr6 (197-259)||(33871906-33871968)
[»] chr4 (7 HSPs)
chr4 (197-259)||(53485773-53485835)
chr4 (359-434)||(42110236-42110311)
chr4 (197-256)||(29599246-29599305)
chr4 (197-256)||(54035531-54035590)
chr4 (198-256)||(6779528-6779586)
chr4 (197-259)||(42110075-42110137)
chr4 (40-88)||(5430275-5430323)
[»] chr1 (3 HSPs)
chr1 (197-254)||(28431039-28431096)
chr1 (359-434)||(28430862-28430937)
chr1 (197-256)||(45135035-45135094)
[»] chr2 (2 HSPs)
chr2 (359-434)||(7517713-7517788)
chr2 (191-228)||(31051945-31051982)
[»] chr5 (1 HSPs)
chr5 (197-256)||(973362-973421)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 26225500 - 26225271
Alignment:
Q  20 tttttaagcaattttaaattataatggtgcaattatcacgtatgcacaaaacaatcaatagagttataaattataatggaagaataaggtaaagtaacaa 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||     
T  26225500 tttttaagcgattttaaattataatggtgcaattatcacgtatgcacaaa-caatcaatagagttataaattataatggaagaataaggtaaagtaacac 26225402  T
Q  120 cgaaataaaggaattcattaggaatgcatttagtcttctagcaaacaaataagaaatgataatagattctttctttcttttttaagcaaaagatgggatg 219  Q
    ||||||||||||||           |||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||    
T  26225401 cgaaataaaggaat-----------gcatttcgtcttctagcaaacaaataagaaatgataatatattcttttttttttttttaaacaaaagatgggatg 26225313  T
Q  220 cagaggggtcttatgctgcagaacccaaatcatatattaagc 261  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  26225312 cagaggggtctcatgctgcagaacccaaatcatatattaagc 26225271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 359 - 432
Target Start/End: Complemental strand, 26225171 - 26225098
Alignment:
Q  359 taatgaggcgaacgactcgaggcacccactttgaatctttttcccgtctgaggttgcttcttcttgagtttctt 432  Q
    |||||||| |||||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  26225171 taatgaggtgaacgacttgaggcacccaccttgaatccttttcccgtctcaggttgcttcttcttgagtttctt 26225098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 41799075 - 41799151
Alignment:
Q  183 agattctttctttcttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatattaa 259  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||||||    
T  41799075 agattttttttttattttttaagcaaaagatgggatgcagaggggtctcctgctgcagtacccaaaacatatattaa 41799151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 30353210 - 30353285
Alignment:
Q  359 taatgaggcgaacgactcgaggcacccactttgaatctttttcccgtctgaggttgcttcttcttgagtttcttct 434  Q
    ||||||||||| ||||||||||||||||| ||||||| |||| |||||| |||||| |||||||||| ||||||||    
T  30353210 taatgaggcgagcgactcgaggcacccaccttgaatcctttttccgtctcaggttgtttcttcttgaatttcttct 30353285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 41799251 - 41799326
Alignment:
Q  359 taatgaggcgaacgactcgaggcacccactttgaatctttttcccgtctgaggttgcttcttcttgagtttcttct 434  Q
    |||||||||||||| || || |||||||| ||||||| | | ||||||| ||||||||||||||||||||||||||    
T  41799251 taatgaggcgaacggctggaagcacccaccttgaatcctctgcccgtctcaggttgcttcttcttgagtttcttct 41799326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 30353029 - 30353091
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatattaa 259  Q
    |||||||||||||||||||||||||| |||||||  | ||| |||||||||||||||||||||    
T  30353029 ttttttaagcaaaagatgggatgcagcggggtctcctcctgtagaacccaaatcatatattaa 30353091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 49393340 - 49393373
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtct 230  Q
    |||||||||||||||| |||||||||||||||||    
T  49393340 ttttttaagcaaaagaagggatgcagaggggtct 49393373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 33871968 - 33871906
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatattaa 259  Q
    ||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||||||    
T  33871968 ttttttaagcaaaagatgggatgcagaggggtctcctgctgcagtacccaaaacatatattaa 33871906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 53485773 - 53485835
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatattaa 259  Q
    ||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||||||||||    
T  53485773 ttttttaagcaaaagatgggatgcagaggggtctcctgctgcagtacccaaaacatatattaa 53485835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 42110236 - 42110311
Alignment:
Q  359 taatgaggcgaacgactcgaggcacccactttgaatctttttcccgtctgaggttgcttcttcttgagtttcttct 434  Q
    |||||||||||||| || || |||||||| ||||||| | | |||| || ||||||||||||||||||||||||||    
T  42110236 taatgaggcgaacggctggaagcacccaccttgaatcctctgcccgcctcaggttgcttcttcttgagtttcttct 42110311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 29599246 - 29599305
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatat 256  Q
    |||||||||||||||| ||||||||||| | |||  ||||||||||||| ||||||||||    
T  29599246 ttttttaagcaaaagaagggatgcagagcgatctcctgctgcagaaccctaatcatatat 29599305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 54035531 - 54035590
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatat 256  Q
    ||||||||| |||||| ||| |||||||||||||  ||||||||||||| ||||||||||    
T  54035531 ttttttaagtaaaagaaggggtgcagaggggtctcttgctgcagaaccctaatcatatat 54035590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 6779528 - 6779586
Alignment:
Q  198 tttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatat 256  Q
    ||||||||||||||| ||||||||||||| |||  ||||| ||||||| ||||||||||    
T  6779528 tttttaagcaaaagaagggatgcagagggatctcctgctgtagaaccctaatcatatat 6779586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 42110075 - 42110137
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatattaa 259  Q
    ||||||||  ||||||||||||||||||| ||||  |||||||| ||||||| ||||||||||    
T  42110075 ttttttaattaaaagatgggatgcagaggagtctcctgctgcagtacccaaaacatatattaa 42110137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 5430275 - 5430323
Alignment:
Q  40 ataatggtgcaattatcacgtatgcacaaaacaatcaatagagttataa 88  Q
    |||||||||||||| || | ||| ||||||||||||||| |||||||||    
T  5430275 ataatggtgcaattttcccatatacacaaaacaatcaatggagttataa 5430323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 28431096 - 28431039
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatat 254  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||||| |||||    
T  28431096 ttttttaagcaaaagatgggatgcagagggatctcctgctgcagaacccaaaacatat 28431039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 434
Target Start/End: Complemental strand, 28430937 - 28430862
Alignment:
Q  359 taatgaggcgaacgactcgaggcacccactttgaatctttttcccgtctgaggttgcttcttcttgagtttcttct 434  Q
    |||||||||||||| || || |||||||| ||||||| | | |||| || ||||||||||||||||||||||||||    
T  28430937 taatgaggcgaacggctggaagcacccaccttgaatcctctgcccgcctcaggttgcttcttcttgagtttcttct 28430862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 45135035 - 45135094
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatat 256  Q
    |||||||||||||||| ||||||||||||| |||  ||||||||||||| ||| ||||||    
T  45135035 ttttttaagcaaaagaagggatgcagagggatctcctgctgcagaaccctaattatatat 45135094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 359 - 434
Target Start/End: Original strand, 7517713 - 7517788
Alignment:
Q  359 taatgaggcgaacgactcgaggcacccactttgaatctttttcccgtctgaggttgcttcttcttgagtttcttct 434  Q
    |||||||||||||| || ||||||||||| ||||||| ||| | || || |||||||||||||||| |||||||||    
T  7517713 taatgaggcgaacggcttgaggcacccaccttgaatcctttgctcgcctcaggttgcttcttcttgtgtttcttct 7517788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 31051982 - 31051945
Alignment:
Q  191 tctttcttttttaagcaaaagatgggatgcagaggggt 228  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  31051982 tcttttttttttaagcaaaaaatgggatgcagaggggt 31051945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 973362 - 973421
Alignment:
Q  197 ttttttaagcaaaagatgggatgcagaggggtcttatgctgcagaacccaaatcatatat 256  Q
    ||||||||||||||||  ||||||||| || |||  ||||||||||||| ||||||||||    
T  973362 ttttttaagcaaaagaaaggatgcagatggatctcctgctgcagaaccctaatcatatat 973421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University