View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1038_high_5 (Length: 361)
Name: NF1038_high_5
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1038_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 96 - 354
Target Start/End: Original strand, 34411731 - 34411993
Alignment:
| Q |
96 |
attagccgttgatggaggacacgtgtagggatgagattaattgcacgttataaagaacagtagtgaaatttttccaactattgaataatgttcttttctt |
195 |
Q |
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| T |
34411731 |
attagccgttgatggaggacacgtgtagggatgagattaattgcacgttataaagaacagtagtgaaatttttccaactattgaataatgttcttttctt |
34411830 |
T |
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| Q |
196 |
acttgccagtctgccatatgattgatcggtcgaatttgtacaacctgtattatg---atttatgcatga-nnnnnnnngaaagcattcttggttgtaacg |
291 |
Q |
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| T |
34411831 |
acttgccagtctgccatatgattgatcggtcgaatttgtacaacctgtattatgtgattttatgcatgatttttttttgaaagcattcttggttgtaacg |
34411930 |
T |
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| Q |
292 |
tttgtttgttcaattataagtttgaattttgttattcattaggataatcgtatagaataatct |
354 |
Q |
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| T |
34411931 |
tttgtttgttcaattataagtttgaattttgttattcattaggataattgtatagaataatct |
34411993 |
T |
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