View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1038_low_1 (Length: 640)
Name: NF1038_low_1
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1038_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 640
Target Start/End: Complemental strand, 507135 - 506527
Alignment:
| Q |
16 |
atgagaaacttgaataaaattaaaacaaaagaattgattgccagttcgtctggtttgtttccacgtgtcatgnnnnnnnaactctaaccaattcttttat |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
507135 |
atgagaaacttgaatacaattaaaacaaaagaattgattgccagttcgtctggtttgtttccacatgtcatgtttttttaactctaaccaattcttttat |
507036 |
T |
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| Q |
116 |
cagcgaaaaaatccaaaacaaacaataagttcaagcctttcatttagcatacctgttgatctctcacagctcttgcacctaatatgtaccttattaggtg |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
507035 |
cagcgaaaaaattcaaaacaaacaataagttcaagcctttcatttagcatacctgttgatctctcacagctcttgcacctaatatgtaccttattaggtg |
506936 |
T |
|
| Q |
216 |
tgttcaccaagaacacaacacaaggtgtacccacatcctagcattaattacgatataatttgtttagcgttcttggtgaacacttgaattgctccttttc |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
506935 |
tgttcaccaagaac-----acaaggtgtacccacatcctagcattaattacgatataatttgtttagcgttcttggtgaacacttgaattgctccttttc |
506841 |
T |
|
| Q |
316 |
atctcatacaattctcatttacaagtttttgtcaggaataatacagtggctaaaagttagccaaatgtagtttatgaatgattgtgatcttaaaggaact |
415 |
Q |
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| T |
506840 |
a-----------tctcatttacaattttttgtcagg---aatacagtggctaaaagttagccaaatgtagtttatgaatgattg---tcttaaaggaact |
506758 |
T |
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| Q |
416 |
tatattattgtc------atgtaaagagatggaataaccttgttgcatttttgagccatcaatgtggtttcataaatagaaaagattcctaaaagtctag |
509 |
Q |
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| T |
506757 |
tatattattgtcatgtaaatgtaaagagatggaataaccttgttgcatttttgagccatcaatgtggtttcataaatagaaaagattcctaaaagtctag |
506658 |
T |
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| Q |
510 |
caagtaacattgggcggcaaaagcaatggaggatctgatatatgttttgaactaacaatatcgataggaaaatcatttcttcttcccttctgagtaatat |
609 |
Q |
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| T |
506657 |
caagtaacattgggcagcaaaagcaatggaggatctgatatatgttttgaactaacaatatcgataggaaaatcatttcttcttcccttctgagtaatat |
506558 |
T |
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| Q |
610 |
aatcaaaaccaacactacctttggtgccaat |
640 |
Q |
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| T |
506557 |
aatcaaaaccaacactacctttggtgccaat |
506527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 232 - 505
Target Start/End: Complemental strand, 48000 - 47729
Alignment:
| Q |
232 |
aacacaaggtgtacccacatcctagcattaattacgatataatttgtttagcgttcttggtgaacacttgaattgctccttttcatctcatacaattctc |
331 |
Q |
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| T |
48000 |
aacacaaggtgtcgccacgtcctagcatgaattacgatataatgtgttaagtgttcttgttgaacacctgatgtactactattcatctcgtacaattttc |
47901 |
T |
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| Q |
332 |
atttacaagtttttgtcaggaataatacagtggctaaaa-----gttagccaaatgtagtttatgaatgattgtgatcttaaaggaacttatattattgt |
426 |
Q |
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| T |
47900 |
atctacaagtttt-gttaggaatatg---gaggctaaaataaaagtaagccaaatgtggtttatgaacgattgt---ctcaaaggaacttatattattgt |
47808 |
T |
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| Q |
427 |
catgtaaagagatggaataaccttgttgcatttttgagccatcaatgtggtttcataaatagaaaagattcctaaaagt |
505 |
Q |
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| T |
47807 |
catgcaaagcgatggaatagccttgttgcatttttgagccatcactatggtttcagaaatagaaaagattcctaaaagt |
47729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 566 - 640
Target Start/End: Complemental strand, 47643 - 47569
Alignment:
| Q |
566 |
aatatcgataggaaaatcatttcttcttcccttctgagtaatataatcaaaaccaacactacctttggtgccaat |
640 |
Q |
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| T |
47643 |
aatatcaataggaaaatcatttcttcttcccttctgagtaacataatcaaaaccaacactacctttggtgccaat |
47569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 48200 - 48074
Alignment:
| Q |
95 |
aactctaaccaattcttttatcagcgaaaaaa-tccaaaacaaacaataagttcaagcc-------tttcatttagcatacctgttgatctctcacagct |
186 |
Q |
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| T |
48200 |
aactctaacccattctcttttcagcaaaaaaaatccaaaacaagcaataagttcaagtctttcatttttcattttgaatacacacagatctcttacagct |
48101 |
T |
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| Q |
187 |
cttgcacctaatatgtaccttattagg |
213 |
Q |
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| T |
48100 |
cttgcacctaatatgtaccttattagg |
48074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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