View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1038_low_12 (Length: 355)
Name: NF1038_low_12
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1038_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 47 - 297
Target Start/End: Original strand, 52807965 - 52808221
Alignment:
| Q |
47 |
gtgcaaaatgtaacaaaaagatgataa------taataatgtgagaaggatgtttgattggtgttagagcataagacaaacaaatacttgcatgattggt |
140 |
Q |
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| T |
52807965 |
gtgcaaaatgtaacaaaaagataataataataataataatgtgagaaggatgtttgattggtgttagagcataagacaaacaaatacttgcatgattggt |
52808064 |
T |
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| Q |
141 |
ttatggatgaaacctggcaattatggtattttgctgtggtgcgaattggtaattaatcaccttattaactatgtttggctgtactaataaacaactctat |
240 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52808065 |
ctatggatgaaacctggcaattatggtattttgttgtggtgcgaattggtaattaatcaccttattaactatgtttggctgtactaataaacaactctat |
52808164 |
T |
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| Q |
241 |
cggttagttaagaaactaaactaccagttacaaacaaagtttaagttacagcctatg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52808165 |
cggttagttaagaaactaaactaccagttacaaacaaagtttaagttacagcctatg |
52808221 |
T |
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