View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1038_low_17 (Length: 277)
Name: NF1038_low_17
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1038_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 37 - 266
Target Start/End: Complemental strand, 44286649 - 44286417
Alignment:
| Q |
37 |
acccccaaccattttctctcttctgcaacgttcccttcgtttccattttcccattcctcttattgccaacttttgttctcaggttattcatatggtaatt |
136 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44286649 |
acccccaacccttttctctcttctgcaacgttcccttcgtttccattttcccattcctcttattgccaacttttcttctcaggttattcatatggtaatt |
44286550 |
T |
|
| Q |
137 |
ttcttttccctctttcttacaatttttgtttccttcatgttcgactctaagtaataacaagtacattattattgttattat---tattttgaaggatcct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
44286549 |
ttcttttccctctttcttacaatttttgtttccttcatgtttgactctaagtaataacaagtacattattattattattattattattttgaaggatcct |
44286450 |
T |
|
| Q |
234 |
catgctgctgaagatttgcctcaatacattcat |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
44286449 |
catgctgctgaagatttgcctcaatacattcat |
44286417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 37 - 266
Target Start/End: Original strand, 44069372 - 44069596
Alignment:
| Q |
37 |
acccccaaccattttctctcttctgcaacgttcccttcgtttccattttcccattcctcttattgccaacttttgttctcaggttattcatatggtaatt |
136 |
Q |
| |
|
|||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44069372 |
acccccaacccttttctcgcttctgcaag-----cttcgtttccattttctcattcctcttattgccaacttttgttctcaggttattcatatggtaatt |
44069466 |
T |
|
| Q |
137 |
ttcttttccctctttcttacaatttttgtttccttcatgttcgactctaagtaataacaagtacattattattgttattattattttgaaggatcctcat |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44069467 |
ttcttttccctctttcttacaatttttgtttccttcatgttcgactctaagtaataacaagtacattattattgttattattattttgaaggatcctcat |
44069566 |
T |
|
| Q |
237 |
gctgctgaagatttgcctcaatacattcat |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44069567 |
gctgctgaagatttgcctcaatacattcat |
44069596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 44084285 - 44084203
Alignment:
| Q |
187 |
gtaataacaagtacattattattgttattattatt---ttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
266 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44084285 |
gtaataacaagtacattattattattattattattattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
44084203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 16443135 - 16443217
Alignment:
| Q |
187 |
gtaataacaagtacattattattgttat---tattattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
266 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16443135 |
gtaataacaagtacattattattattattattattattttgaaggatcctcatgctgctgaagatttgcctcaatacattcat |
16443217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University