View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1038_low_18 (Length: 273)
Name: NF1038_low_18
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1038_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 41921092 - 41920879
Alignment:
| Q |
37 |
catcagttgcttagattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttgaatgctaccaaataactaagacaatagta |
136 |
Q |
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| T |
41921092 |
catcagttgcttaaattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttgaatgctatcaaataactaagacaatagta |
41920993 |
T |
|
| Q |
137 |
ctgatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatcca |
236 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920992 |
ctaatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatcca |
41920893 |
T |
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| Q |
237 |
ttcatctcactcgac |
251 |
Q |
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||||| ||||||||| |
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| T |
41920892 |
ttcat-tcactcgac |
41920879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 26829762 - 26829862
Alignment:
| Q |
141 |
tttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattca |
240 |
Q |
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||||||||||||| ||||||| |||||| |||| |||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26829762 |
tttatacctgtctccaatcctaaatcgaagctttttgagtcctttaccactagctttacccttgaaagcatctccaagtttttcagtgacaatccattca |
26829861 |
T |
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| Q |
241 |
t |
241 |
Q |
| |
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| |
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| T |
26829862 |
t |
26829862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 26789245 - 26789346
Alignment:
| Q |
140 |
atttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattc |
239 |
Q |
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|||| ||||||||| |||| | |||||| |||| |||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
26789245 |
atttttacctgtctacaattttaaatcgaagctttttgagttctttaccaccatctttacccttgagagcatctccaagtttttcagtgacaatccattc |
26789344 |
T |
|
| Q |
240 |
at |
241 |
Q |
| |
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|| |
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|
| T |
26789345 |
at |
26789346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 241
Target Start/End: Original strand, 26816137 - 26816176
Alignment:
| Q |
202 |
ttgagagcatctccaagtttctcagtgacaatccattcat |
241 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcat |
26816176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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