View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1038_low_2 (Length: 523)

Name: NF1038_low_2
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1038_low_2
NF1038_low_2
[»] chr4 (4 HSPs)
chr4 (8-500)||(18810056-18810546)
chr4 (378-496)||(13758161-13758279)
chr4 (241-337)||(13757991-13758088)
chr4 (24-123)||(13757802-13757899)
[»] chr2 (2 HSPs)
chr2 (8-485)||(24078397-24078867)
chr2 (238-500)||(24072841-24073103)
[»] chr7 (6 HSPs)
chr7 (8-500)||(12315689-12316162)
chr7 (265-500)||(18566807-18567042)
chr7 (8-269)||(18536478-18536734)
chr7 (378-496)||(1724461-1724579)
chr7 (241-337)||(1724292-1724389)
chr7 (9-123)||(1724088-1724200)
[»] chr5 (1 HSPs)
chr5 (8-500)||(19834726-19835215)
[»] chr6 (1 HSPs)
chr6 (317-500)||(892973-893156)
[»] chr3 (4 HSPs)
chr3 (378-496)||(54077832-54077950)
chr3 (241-337)||(54077663-54077760)
chr3 (9-123)||(54077459-54077571)
chr3 (125-189)||(9783307-9783371)
[»] scaffold0054 (2 HSPs)
scaffold0054 (89-124)||(28059-28094)
scaffold0054 (13-65)||(28115-28167)


Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 8 - 500
Target Start/End: Complemental strand, 18810546 - 18810056
Alignment:
Q  8 ccaacaatatcaatgaaaattcactatatgtaagctttcctcaaaggcaactgaaaagtagaagagnnnnnnnnnng----gcagaatatatatttttaa 103  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||               |||||||||||||||||||    
T  18810546 ccaacaataccaatgaaaattcactatatgtaagttttcctcaaaggcaactgaaaagtagaagaggaaaaaaaaaaaaaagcagaatatatatttttaa 18810447  T
Q  104 atcaagtgccaaagttataaaaatcataaatcaatagcttgattaaagaaacaagcaatagatacctaagagcaccaaagaattgacctagggcggaaat 203  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||  |||||||    
T  18810446 atcaagtgtcaaagttataacaatcctaaatcaatagcttgattaaagaaacaaacaatagatacctaagagcaccaaagaattgatctagaacggaaat 18810347  T
Q  204 aagtaaaaaccaaacatatgcnnnnnnnnnnnnncatatgaattatttgacacaccaaattacgttgttacttccttttttattaattaaatatgatgca 303  Q
    |||||||||||||||||||||              |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18810346 aagtaaaaaccaaacatatgcaaaaaaat------atatgaattatttgacacaccaaattacattgttacttccttttttattaattaaatatgatgca 18810253  T
Q  304 caataagctcttacatatataaaagggtgtatcacctttgtaatttatttattaaaatgagaataaacattgccatgaaccaaatattattcattgatcc 403  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18810252 caataagctcttacatatataaaagggtttatcacctttgtaatttatttattaaaatgagaataaacattgctatgaaccaaatattattcattgatcc 18810153  T
Q  404 atgcaacacaaacgccttgatctcaacttaaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgt 500  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18810152 atgcaacacgaacgccttgatctgaacttgaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgt 18810056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 378 - 496
Target Start/End: Original strand, 13758161 - 13758279
Alignment:
Q  378 atgaaccaaatattattcattgatccatgcaacacaaacgccttgatctcaacttaaaaagaaagaaagatatttccattaccatggaattgttgaatac 477  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||    
T  13758161 atgacccaaatattattcattgatccatgcaacacaaacgccttgatttcaacttaaaaggaaagaaagatatatccattaccatggaattgttgaaaac 13758260  T
Q  478 ccataaaaccaaattaaaa 496  Q
     ||||||||||||| ||||    
T  13758261 acataaaaccaaataaaaa 13758279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 13757991 - 13758088
Alignment:
Q  241 atgaattatttgacacaccaaattacgttgttacttccttttttattaattaaatatgatgcacaataagctcttacatatat-aaaagggtgtatca 337  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||  ||||||| ||||||||||||| ||||||||||||||    
T  13757991 atgaattatttgtcacaccaaattacgttgttacttccttttctattgattaaatttgatttacaataaactcttacatatatcaaaagggtgtatca 13758088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 13757802 - 13757899
Alignment:
Q  24 aaattcactatatgtaagctttcctcaaaggcaactgaaaagtagaagagnnnnnnnnnnggcagaatatatatttttaaatcaagtgccaaagttataa 123  Q
    ||||||||| |||||||| |||||| |||||||||| |||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  13757802 aaattcactctatgtaagttttccttaaaggcaactaaaaagtagaagagggaaaagaaa--cagaatatatatttttaaatcaagtgccaaagttataa 13757899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 485
Target Start/End: Complemental strand, 24078867 - 24078397
Alignment:
Q  8 ccaacaatatcaatgaaaattcactatatgtaagctttcctcaaaggcaactgaaaagtagaagagnnnnnnnnnnggcagaatatatatttttaaatca 107  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||    
T  24078867 ccaactataccaatgaaaattcactatatgtaagctttcctcaaaggcaactgaaaagtagaagaggaaaaaaaa--gcagaatatatatttttaaatca 24078770  T
Q  108 agtgccaaagttataaaaatcataaatcaatagcttgattaaagaaacaagcaatagatacctaagagcaccaaagaattgacctagggcggaaataagt 207  Q
    || ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||  ||||||||||    
T  24078769 agcgccaaagttataacaatcataaatcaatagcttgattaaagaaacaaacaatagatacctaagagcaccaaagaattgatgtaggagggaaataagt 24078670  T
Q  208 aaaaaccaaacatatgcnnnnnnnnnnnnncatatgaattatttgacacaccaaattacgttgttacttccttttttattaattaaatatgatgcacaat 307  Q
    |||||||||||||||||             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24078669 aaaaaccaaacatatgcaaaaaaaa-----catatgaattatttgacacaccaaattacgttgttacatccttttttattaattaaatatgatgcacaat 24078575  T
Q  308 aagctcttacatatataaaagggtgtatcacctttgtaatttatttattaaaatgagaataaacattgccatgaaccaaatattattcattgatccatgc 407  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||    
T  24078574 aagctcttacatatataaaagggtgtatcacctttgcaatttatttattaaaatgagaataaacattgttatgaaccaaatattattcattgatccttgc 24078475  T
Q  408 aacacaaacgccttgatctcaacttaaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaa 485  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24078474 aacacaaacgccttgatcttaacttgaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaa 24078397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 238 - 500
Target Start/End: Complemental strand, 24073103 - 24072841
Alignment:
Q  238 catatgaattatttgacacaccaaattacgttgttacttccttttttattaattaaatatgatgcacaataagctcttacatatataaaagggtgtatca 337  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24073103 catatgaattatttgacacaccaaattacgttgttacatccttttttattaattaaatatgatgcacaataagctcttacatatataaaagggtgtatca 24073004  T
Q  338 cctttgtaatttatttattaaaatgagaataaacattgccatgaaccaaatattattcattgatccatgcaacacaaacgccttgatctcaacttaaaaa 437  Q
    |||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  24073003 cctttgcaatttatttattaaaatgagaataaacattgttatgaaccaaatattattcattgatccatgcaacacaaacgccttgatcttaacttgaaaa 24072904  T
Q  438 gaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24072903 gaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgt 24072841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 500
Target Start/End: Original strand, 12315689 - 12316162
Alignment:
Q  8 ccaacaatatcaatgaaaattcactatatgtaagctttcctcaaaggcaactgaaaagtagaagagnnnnnnnnnnggcagaatatatatttttaaatca 107  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||              ||| | | |    || ||||    
T  12315689 ccaacaataccaatgaaaattcactatgtgtaagcttttctcaaaggcaactgaaaagtagaagag--------------gaaaaaaaagcaatatatca 12315774  T
Q  108 agtgccaaagttataaaaatcataaatcaatagcttgattaaagaaacaagcaatagatacctaagagcaccaaagaattgacctagggcggaaataagt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  12315775 agtgccaaagttataaaaatcataaatcaatagcttgattaaagaaacaaacaatagatacctaagagcaccaaataattgatctaggacggaaataagt 12315874  T
Q  208 aaaaaccaaacatatgcnnnnnnnnnnnnncatatgaattatttgacacaccaaattacgttgttacttccttttttattaattaaatatgatgcacaat 307  Q
    |||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12315875 aaaaaccaaacatatgcaaaaaaaa-----catatgaattatttgacacaccaaattacgttgttacttccttttttattaattaaatatgatgcacaat 12315969  T
Q  308 aagctcttacatatataaaagggtgtatcacctttgtaatttatttattaaaatgagaataaacattgccatgaaccaaatattattcattgatccatgc 407  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12315970 aagctcttacatatataaaagggtgtatcacctttgcaatttatttattaaaatgagaataaacattgctatgaaccaaatattattcattgatccatgc 12316069  T
Q  408 aacacaaacgccttgatctcaacttaaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgt 500  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12316070 aacacaaacgccttaatctcaacttgaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgt 12316162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 265 - 500
Target Start/End: Complemental strand, 18567042 - 18566807
Alignment:
Q  265 acgttgttacttccttttttattaattaaatatgatgcacaataagctcttacatatataaaagggtgtatcacctttgtaatttatttattaaaatgag 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  18567042 acgttgttacttccttttttattaattaaatatgatgcacaataagctcttacatatataaaagggtgtatcacctttgcaatttatctattaaaatgag 18566943  T
Q  365 aataaacattgccatgaaccaaatattattcattgatccatgcaacacaaacgccttgatctcaacttaaaaagaaagaaagatatttccattaccatgg 464  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  18566942 aataaacattgctatgaaccaaatattattcattgatccatgcaacacaaacgccttgatctcaacttgaaaagaaagaaagatattttcattaccatgg 18566843  T
Q  465 aattgttgaatacccataaaaccaaattaaaaatgt 500  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18566842 aattgctgaatacccataaaaccaaattaaaaatgt 18566807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 18536478 - 18536734
Alignment:
Q  8 ccaacaatatcaatgaaaattcactatatgtaagctttcctcaaaggcaactgaaaagtagaagagnnnnnnnnnnggcagaatatatatttttaaatca 107  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||          | ||||||||||||||||||||||    
T  18536478 ccaacaataccaatgaaaattcactatatgtaagctttcctcaaaggcaactaaaaagtagaagaggaaaaaaaaag-cagaatatatatttttaaatca 18536576  T
Q  108 agtgccaaagttataaaaatcataaatcaatagcttgattaaagaaacaagcaatagatacctaagagcaccaaagaattgacctagggcggaaataagt 207  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  18536577 agtgccaaagttataacaatcataaatcaatagcttgattaaagaaacaaacaatagatacctaagagcaccaaagaattgatctaggacggaaataagt 18536676  T
Q  208 aaaaaccaaacatatgcnnnnnnnnnnnnncatatgaattatttgacacaccaaattacgtt 269  Q
    |||||||||||||||||             ||||||||||||||||||||||||||||||||    
T  18536677 aaaaaccaaacatatgc----aaaaaaaaacatatgaattatttgacacaccaaattacgtt 18536734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 378 - 496
Target Start/End: Original strand, 1724461 - 1724579
Alignment:
Q  378 atgaaccaaatattattcattgatccatgcaacacaaacgccttgatctcaacttaaaaagaaagaaagatatttccattaccatggaattgttgaatac 477  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||    
T  1724461 atgacccaaatattattcattgatccatgcaacacaaacgccttgatttcaacttaaaaggaaagaaagatatatccattaccatggaattgttgaaaac 1724560  T
Q  478 ccataaaaccaaattaaaa 496  Q
     ||||||||||||| ||||    
T  1724561 acataaaaccaaataaaaa 1724579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 1724292 - 1724389
Alignment:
Q  241 atgaattatttgacacaccaaattacgttgttacttccttttttattaattaaatatgatgcacaataagctcttacatatat-aaaagggtgtatca 337  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||  ||||||| ||||||||||||| ||||||||||||||    
T  1724292 atgaattatttgtcacaccaaattacgttgttacttccttttctattgattaaatttgatttacaataaactcttacatatatcaaaagggtgtatca 1724389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 1724088 - 1724200
Alignment:
Q  9 caacaatatcaatgaaaattcactatatgtaagctttcctcaaaggcaactgaaaagtagaagagnnnnnnnnnnggcagaatatatatttttaaatcaa 108  Q
    |||||||| ||||  ||||||||| |||||||| |||||| |||||||||| ||| |||||||||            || ||||||||||||||||||||    
T  1724088 caacaataccaatctaaattcactctatgtaagttttccttaaaggcaactaaaaggtagaagagagaaaagaaa--cataatatatatttttaaatcaa 1724185  T
Q  109 gtgccaaagttataa 123  Q
    |||||||||||||||    
T  1724186 gtgccaaagttataa 1724200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 8 - 500
Target Start/End: Complemental strand, 19835215 - 19834726
Alignment:
Q  8 ccaacaatatcaatgaaaattcactatatgtaagctttcctcaaaggcaactgaaaagtagaagagnnnnnnnnnngg---------cagaatatatatt 98  Q
    ||||||||| |||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||                     |||||||||||||    
T  19835215 ccaacaataccaataaaaattcactgtatgtaagctttcctcataggcaactgaaaagtagaagaggaaaaaaaaaaaaaaaaaaaacagaatatatatt 19835116  T
Q  99 tttaaatcaagtgccaaagttataaaaatcataaatcaatagcttgattaaagaaacaagcaatagatacctaagagcaccaaagaattgacctagggcg 198  Q
    |||||||||||||||||||       |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| ||    
T  19835115 tttaaatcaagtgccaaag-------aatcataaattaatagcttgattaaagagacaaacaatagatacctaagagcaccaaagaattgatctaggacg 19835023  T
Q  199 gaaataagtaaaaaccaaacatatgcnnnnnnnnnnnnncatatgaattatttgacacaccaaattacgttgttacttccttttttattaattaaatatg 298  Q
    ||||||||||||||||||||||||||             |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  19835022 gaaataagtaaaaaccaaacatatgcaaaaaaaaa----catatgaactatttga-acaccaaattacgtagttacttccttttttattaattaaatatg 19834928  T
Q  299 atgcacaataagctcttacatatataaaagggtgtatcacctttgtaatttatttattaaaatgagaataaacattgccatgaaccaaatattattcatt 398  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  19834927 atgcacaataagctcttatatatataaaagggtgtatcacctttgcaatttatttattaaaatgagaataaacattactatgaaccaaatattattcatt 19834828  T
Q  399 gatccatgcaacacaaacgccttgatctcaacttaaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaat 498  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19834827 gatccatgcaacacaaacgccttgatctcaacttgaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaat 19834728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 317 - 500
Target Start/End: Original strand, 892973 - 893156
Alignment:
Q  317 catatataaaagggtgtatcacctttgtaatttatttattaaaatgagaataaacattgccatgaaccaaatattattcattgatccatgcaacacaaac 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  892973 catatataaaagggtgtatcacctttgtaatttatttattaaaatgagaataaacattgctatgaaccaaatattattcattgatccatgcaacacaaac 893072  T
Q  417 gccttgatctcaacttaaaaagaaagaaagatatttccattaccatggaattgttgaatacccataaaaccaaattaaaaatgt 500  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  893073 gccttgatctcaacttgaaaagaaagaaagatatttccattatcatggaattgttgaatacccataaaactaaattaaaaatgt 893156  T

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Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 378 - 496
Target Start/End: Original strand, 54077832 - 54077950
Alignment:
Q  378 atgaaccaaatattattcattgatccatgcaacacaaacgccttgatctcaacttaaaaagaaagaaagatatttccattaccatggaattgttgaatac 477  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| ||    
T  54077832 atgacccaaatattattcattgatccatgcaacacaaacgccttgatttcaacttaaaaggaaagaaagatatatccattaccatggaattgttgaaaac 54077931  T
Q  478 ccataaaaccaaattaaaa 496  Q
     ||||||||||||| ||||    
T  54077932 acataaaaccaaataaaaa 54077950  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 54077663 - 54077760
Alignment:
Q  241 atgaattatttgacacaccaaattacgttgttacttccttttttattaattaaatatgatgcacaataagctcttacatatat-aaaagggtgtatca 337  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||  ||||||| ||||||||||||| ||||||||||||||    
T  54077663 atgaattatttgtcacaccaaattacgttgttacttccttttctattgattaaatttgatttacaataaactcttacatatatcaaaagggtgtatca 54077760  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 54077459 - 54077571
Alignment:
Q  9 caacaatatcaatgaaaattcactatatgtaagctttcctcaaaggcaactgaaaagtagaagagnnnnnnnnnnggcagaatatatatttttaaatcaa 108  Q
    |||||||| ||||  |||||||||||||||||| |||||| |||||||||| |||||||||||||            || ||||||||||||||||||||    
T  54077459 caacaataccaatttaaattcactatatgtaagttttccttaaaggcaactaaaaagtagaagagggaaaagaaa--caaaatatatatttttaaatcaa 54077556  T
Q  109 gtgccaaagttataa 123  Q
    |||||||||||||||    
T  54077557 gtgccaaagttataa 54077571  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 9783371 - 9783307
Alignment:
Q  125 aatcataaatcaatagcttgattaaagaaacaagcaatagatacctaagagcaccaaagaattga 189  Q
    |||||||||||||||||   || |||||||||| ||||| |||| ||| | ||||||||||||||    
T  9783371 aatcataaatcaatagcactataaaagaaacaaacaataaatacataaaatcaccaaagaattga 9783307  T

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Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 124
Target Start/End: Complemental strand, 28094 - 28059
Alignment:
Q  89 aatatatatttttaaatcaagtgccaaagttataaa 124  Q
    ||||||||||||||||||||||||||||||| ||||    
T  28094 aatatatatttttaaatcaagtgccaaagttttaaa 28059  T

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Target: scaffold0054; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 28167 - 28115
Alignment:
Q  13 aatatcaatgaaaattcactatatgtaagctttcctcaaaggcaactgaaaag 65  Q
    |||| ||||| ||||||||||| |||||| |||  ||||||||||||||||||    
T  28167 aataccaatgtaaattcactatgtgtaagtttttatcaaaggcaactgaaaag 28115  T

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