View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1038_low_3 (Length: 496)
Name: NF1038_low_3
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1038_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 37 - 490
Target Start/End: Complemental strand, 41921092 - 41920638
Alignment:
| Q |
37 |
catcagttgcttagattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttgaatgctaccaaataactaagacaatagta |
136 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
41921092 |
catcagttgcttaaattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttgaatgctatcaaataactaagacaatagta |
41920993 |
T |
|
| Q |
137 |
ctgatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatcca |
236 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920992 |
ctaatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatcca |
41920893 |
T |
|
| Q |
237 |
ttcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatgg |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41920892 |
ttcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatgg |
41920793 |
T |
|
| Q |
337 |
agtgacctgacatgtagaaaacacaatcaagttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaa-ttggcttatgtatttgtaca |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41920792 |
agtgacctgacatgtagaaaacacaatcaagttaacaaagttttacttgcataacaagtttcttgtatttaaagggaaatttggcttatgtatttgtaca |
41920693 |
T |
|
| Q |
436 |
gcatgttacacagtagtagttaaaaaaggtatacatttaaatacatattattcga |
490 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
41920692 |
gcatgttacacagtagtagttgaaaaaggtatacatttaaatacatattattcga |
41920638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 141 - 345
Target Start/End: Original strand, 26829762 - 26829966
Alignment:
| Q |
141 |
tttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattca |
240 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||| |||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
26829762 |
tttatacctgtctccaatcctaaatcgaagctttttgagtcctttaccactagctttacccttgaaagcatctccaagtttttcagtgacaatccattca |
26829861 |
T |
|
| Q |
241 |
ttcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagtg |
340 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |||||||||| || ||| ||||||||| |||||| |||| |||||||||||| |||||||||| || |
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|
| T |
26829862 |
ttcactctactagcctctagtagaccaataatcgttgcctttgttcgatgaagagacatggtattctcgaataaaatccaaaagacaagtaaatggaatg |
26829961 |
T |
|
| Q |
341 |
acctg |
345 |
Q |
| |
|
||||| |
|
|
| T |
26829962 |
acctg |
26829966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 200 - 346
Target Start/End: Original strand, 26782932 - 26783078
Alignment:
| Q |
200 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacat |
299 |
Q |
| |
|
|||| ||||||| ||||||||| || |||||||||||||||||||||| ||||| ||| |||| |||||||| ||||||||||||| || | |||||| |
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|
| T |
26782932 |
ccttaagagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttgctcgatttaaagacat |
26783031 |
T |
|
| Q |
300 |
gacattctcaaatagaatccaaaagacgagtaaatggagtgacctga |
346 |
Q |
| |
|
| ||||||||| ||||||||||| || | |||||| | |||||||| |
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|
| T |
26783032 |
ggtattctcaaagagaatccaaaatacaactaaatgcaatgacctga |
26783078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 140 - 346
Target Start/End: Original strand, 26789245 - 26789451
Alignment:
| Q |
140 |
atttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattc |
239 |
Q |
| |
|
|||| ||||||||| |||| | |||||| |||| |||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
26789245 |
atttttacctgtctacaattttaaatcgaagctttttgagttctttaccaccatctttacccttgagagcatctccaagtttttcagtgacaatccattc |
26789344 |
T |
|
| Q |
240 |
attcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatgacattctcaaatagaatccaaaagacgagtaaatggagt |
339 |
Q |
| |
|
|||||||| ||||| ||| || |||||||||| ||||| |||| || ||| |||| ||| ||| ||||| |||| |||||||| | ||||| || | |
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|
| T |
26789345 |
attcactctactagtctctagcagaccaataattgttgcttttgttcgatgtagagctatggtattttcaaagagaacccaaaagataactaaatagaat |
26789444 |
T |
|
| Q |
340 |
gacctga |
346 |
Q |
| |
|
||||||| |
|
|
| T |
26789445 |
gacctga |
26789451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 202 - 325
Target Start/End: Original strand, 26816137 - 26816260
Alignment:
| Q |
202 |
ttgagagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgctctatgcagagacatga |
301 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||| |||| || ||| |||| ||| |
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|
| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagtagaccaataattgttgcttttgttcgatgtagagctatgg |
26816236 |
T |
|
| Q |
302 |
cattctcaaatagaatccaaaaga |
325 |
Q |
| |
|
||| ||||| |||| |||||||| |
|
|
| T |
26816237 |
tattttcaaagagaacccaaaaga |
26816260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 2301264 - 2301218
Alignment:
| Q |
200 |
ccttgagagcatctccaagtttctcagtgacaatccattcattcact |
246 |
Q |
| |
|
|||| ||||||| ||||||||| | |||||||||||||||||||||| |
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|
| T |
2301264 |
ccttaagagcatttccaagttttttagtgacaatccattcattcact |
2301218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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