View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1038_low_4 (Length: 447)

Name: NF1038_low_4
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1038_low_4
NF1038_low_4
[»] chr1 (2 HSPs)
chr1 (30-436)||(45923036-45923440)
chr1 (353-404)||(45922293-45922344)
[»] chr7 (8 HSPs)
chr7 (349-404)||(42607137-42607192)
chr7 (352-404)||(44541047-44541099)
chr7 (349-404)||(40257636-40257691)
chr7 (349-404)||(6730095-6730150)
chr7 (357-404)||(6729462-6729509)
chr7 (293-340)||(36845203-36845250)
chr7 (349-396)||(40257747-40257794)
chr7 (357-404)||(42607750-42607797)
[»] chr8 (2 HSPs)
chr8 (349-404)||(35943132-35943187)
chr8 (357-404)||(35943776-35943823)
[»] chr2 (2 HSPs)
chr2 (292-340)||(28030249-28030297)
chr2 (289-321)||(38739880-38739912)


Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 30 - 436
Target Start/End: Complemental strand, 45923440 - 45923036
Alignment:
Q  30 tcatagtcaagaaagattatcactaattcttgtgtttgaagaaaatattaagagtgttgataagtcgctttaaaactgttgaggcatatgaatatggtta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45923440 tcatagtcaagaaagattatcactaattcttgtgtttgaagaaaatattaagagtgttgataagtcgctttaaaactgttgaggcatatgaatatggtta 45923341  T
Q  130 acaggttaagacaatttgtgagtctcttttgaactggtcacaggagactcataaaaatgatacaagattttcagtacaaacaatgcgaagcatccctggg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||     
T  45923340 acaggttaagacaatttgtgagtctcttttgaactggtcacaggagactc--aaaaatgatacaagattttcagtacaaacaatgcgaagcatccctggt 45923243  T
Q  230 aaaaaattatcgaccaaccaaagggatattccacacaatctttcaaaaatcgatttcaattggggtgaggtttagcatgggatagggaaattatttttca 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  45923242 aaaaaattatcgaccaaccaaagggatattccacacaatctttcaaaaatcgatttcaattggggtgaggtttagcatgggatagggaaattgttttcca 45923143  T
Q  330 tcatggaaaagnnnnnnnngtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgattannnnnnngctttatcttccactaca 429  Q
     ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  45923142 ccatggaaaagttttttttgtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgattatttttttgctttatcttccactaca 45923043  T
Q  430 tttctct 436  Q
    |||||||    
T  45923042 tttctct 45923036  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 45922293 - 45922344
Alignment:
Q  353 attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45922293 attagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 45922344  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 349 - 404
Target Start/End: Original strand, 42607137 - 42607192
Alignment:
Q  349 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 404  Q
    |||||||||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  42607137 gtccattagatcaaatgagaaacacaatcttatcatgatctatcaacacttgatta 42607192  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 44541047 - 44541099
Alignment:
Q  352 cattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 404  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  44541047 cattagatcaaataagaaacacaatcttatcatggcctatcaacacttaatta 44541099  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 404
Target Start/End: Original strand, 40257636 - 40257691
Alignment:
Q  349 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 404  Q
    |||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||    
T  40257636 gtccattagatcaaatgagaaacacattcttatcatgatctatcaacacttgatta 40257691  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 404
Target Start/End: Complemental strand, 6730150 - 6730095
Alignment:
Q  349 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 404  Q
    ||||||| |||||||  |||||||||||||||||||||||||| |||| |||||||    
T  6730150 gtccattggatcaaatgagaaacacaatcttatcatggtctataaacatttgatta 6730095  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Original strand, 6729462 - 6729509
Alignment:
Q  357 gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 404  Q
    |||||||  |||||||||||||||||||||| ||||||||||| ||||    
T  6729462 gatcaaatgagaaacacaatcttatcatggtttatcaacacttaatta 6729509  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 36845250 - 36845203
Alignment:
Q  293 ggtgaggtttagcatgggatagggaaattatttttcatcatggaaaag 340  Q
    ||||||||||||||||||| |||| |||| ||| ||||||||||||||    
T  36845250 ggtgaggtttagcatgggaaaggggaattgtttctcatcatggaaaag 36845203  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 40257794 - 40257747
Alignment:
Q  349 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaaca 396  Q
    |||||||||||||||  ||||||||| |||||||||| ||||||||||    
T  40257794 gtccattagatcaaatgagaaacacattcttatcatgatctatcaaca 40257747  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 42607797 - 42607750
Alignment:
Q  357 gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 404  Q
    |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  42607797 gatcaaatgagaaacacaatcttatcataatctatcaacacttgatta 42607750  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 349 - 404
Target Start/End: Original strand, 35943132 - 35943187
Alignment:
Q  349 gtccattagatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 404  Q
    |||||||  ||||||  |||||||||||||||||||||||||||||||||||||||    
T  35943132 gtccattgaatcaaatgagaaacacaatcttatcatggtctatcaacacttgatta 35943187  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 404
Target Start/End: Complemental strand, 35943823 - 35943776
Alignment:
Q  357 gatcaaacaagaaacacaatcttatcatggtctatcaacacttgatta 404  Q
    |||||||  |||||||||||||||||||||| ||||||||||| ||||    
T  35943823 gatcaaatgagaaacacaatcttatcatggtttatcaacacttaatta 35943776  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 28030249 - 28030297
Alignment:
Q  292 gggtgaggtttagcatgggatagggaaattatttttcatcatggaaaag 340  Q
    |||||||||||||||||||| ||| ||| |||||||||| |||| ||||    
T  28030249 gggtgaggtttagcatgggaaaggaaaaatatttttcatgatgggaaag 28030297  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 38739912 - 38739880
Alignment:
Q  289 ttggggtgaggtttagcatgggatagggaaatt 321  Q
    ||||||||||||||||||||||| |||||||||    
T  38739912 ttggggtgaggtttagcatgggaaagggaaatt 38739880  T

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