View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1038_low_5 (Length: 421)
Name: NF1038_low_5
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1038_low_5 |
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| [»] chr1 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 3 - 421
Target Start/End: Original strand, 44285855 - 44286273
Alignment:
| Q |
3 |
agcagcaccacagacggattgagtactaaagcttcttaacaattaaacttatgttaattgagaagagaacctacaagggccggcccaagggtaaatccac |
102 |
Q |
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||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44285855 |
agcagcaacagagatggattgagtactaaagcttcttaacaattaaacttatgttaattgagaagagaacctacaagggccggcccaagggtaaatccac |
44285954 |
T |
|
| Q |
103 |
taaagcccttgttttcggcccaccaacaaaaatttatctgtcttcagttttataaagnnnnnnnnggcatcatatgcggataagaaagtcccgtgttata |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
44285955 |
taaagcccttgttttcggcccaccaacaaaaatttatctgtcttcagttttataaagaaaaaaaaggcatcatatgcggataaaaaagtcccgtgttata |
44286054 |
T |
|
| Q |
203 |
aaatttgatttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaaagcctaattgaataca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286055 |
aaatttgatttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaaagcctaattgaataca |
44286154 |
T |
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| Q |
303 |
gaaaagtccaagacagagcaacatcaaactatcctataacctaaataactcataatagtaatgcaactgataattaacttagcaaaccagtaattaacat |
402 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
44286155 |
gaaaagtccaagatagagcaacatcaaactatcctataacctaaataactcataacagtaatgcacctgatagttaacttagcaaaccagtaattaacat |
44286254 |
T |
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| Q |
403 |
aaccagatagtaatgctac |
421 |
Q |
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|||||| |||||||||||| |
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| T |
44286255 |
aaccagttagtaatgctac |
44286273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 3 - 421
Target Start/End: Complemental strand, 44070158 - 44069740
Alignment:
| Q |
3 |
agcagcaccacagacggattgagtactaaagcttcttaacaattaaacttatgttaattgagaagagaacctacaagggccggcccaagggtaaatccac |
102 |
Q |
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||||||| || |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
44070158 |
agcagcaacagagacagattgagtactaaagctccttagaaattaaacttatgttaattgagaagagaacctacacgggccggcccaagggtaagaccac |
44070059 |
T |
|
| Q |
103 |
taaagcccttgttttcggcccaccaacaaaaatttatctgtcttcagttttataaagnnnnnnnnggcatcatatgcggataagaaa-gtcccgtgttat |
201 |
Q |
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|||||| |||| |||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||| || ||||| ||| ||||||| |||| |
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| T |
44070058 |
taaagctcttgctttcggcccaccaacacaaatttatttgtcttcagttttataaagaaaaaaa-ggcctcatacgcagataaaaaaagtcccgtattat |
44069960 |
T |
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| Q |
202 |
aaaatttgatttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaaagcctaattgaatac |
301 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || ||||| |
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| T |
44069959 |
aatatttgatttaagcctcaccgaatattgaaaattattgggccggccctggaacttaccataagagagaaactaatccaaagtaagcctatttaaatac |
44069860 |
T |
|
| Q |
302 |
agaaaagtccaagacagagcaacatcaaactatcctataacctaaataactcataatagtaatgcaactgataattaacttagcaaaccagtaattaaca |
401 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
44069859 |
agaaaagtccaagacagagcaagatcaaactaacctataacctaactaactcataacagtaatgcaaccgatagttaacttagcaaaccagtaattaaca |
44069760 |
T |
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| Q |
402 |
taaccagatagtaatgctac |
421 |
Q |
| |
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||||||| |||||||||||| |
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| T |
44069759 |
taaccagttagtaatgctac |
44069740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 187 - 421
Target Start/End: Original strand, 44083824 - 44084058
Alignment:
| Q |
187 |
aaagtcccgtgttataaaatttgatttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaa |
286 |
Q |
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|||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
44083824 |
aaagtcccgtattataatatttgatttaagcctcaccaaatattgaaaattattgggccggccctggaacttaccataagagagaaactaatccaaagta |
44083923 |
T |
|
| Q |
287 |
agcctaattgaatacagaaaagtccaagacagagcaacatcaaactatcctataacctaaataactcataatagtaatgcaactgataattaacttagca |
386 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||| |||| ||||||||||| |
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| T |
44083924 |
agcctaattgaatacagaaaagtccaagacagagcaagatcaaactaacctataacctaactaactcataacagtaatgcaaccgatagttaacttagca |
44084023 |
T |
|
| Q |
387 |
aaccagtaattaacataaccagatagtaatgctac |
421 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
44084024 |
aaccagtaattaacataaccagttagtaatgctac |
44084058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 47442538 - 47442470
Alignment:
| Q |
78 |
agggccggcccaagggtaaatccactaaagcccttgttttcggcccaccaacaaaaatttatctgtctt |
146 |
Q |
| |
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||||||||| |||||||| ||||||||||| | | ||| || ||||||||||||||||||||||||| |
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| T |
47442538 |
agggccggcttaagggtaaggccactaaagccatagctttaggtccaccaacaaaaatttatctgtctt |
47442470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 3 - 421
Target Start/End: Complemental strand, 16443781 - 16443361
Alignment:
| Q |
3 |
agcagcaccacagacggattgagtactaaagcttcttaacaattaaacttatgttaattgagaagagaacctacaagggccggcccaagggtaaatccac |
102 |
Q |
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||||||| || |||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
16443781 |
agcagcaacagagacagattgagtactaaagctccttagaaattaaacttatgttaattgagaagagaacctacacgggccggcccaagggtaagaccac |
16443682 |
T |
|
| Q |
103 |
taaagcccttgttttcggcccaccaacaaaaatttatctgtcttcagttttataaagnnnnnnnnggcatcatatgcggataagaaa-gtcccgtgttat |
201 |
Q |
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|||||| |||| |||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||| || ||||| ||| ||||||| |||| |
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| T |
16443681 |
taaagctcttgctttcggcccaccaacacaaatttatttgtcttcagttttataaagaaaaaaaaggcctcatacgcagataaaaaaagtcccgtattat |
16443582 |
T |
|
| Q |
202 |
aaaatttgatttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaaagcctaattgaa-ta |
300 |
Q |
| |
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|| ||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || || |
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| T |
16443581 |
aatatttgatttaagcctcaccaantattgaaaattattgggccggccctggaacttaccataagagagaaactaatccaaagtaagcctaatttaaata |
16443482 |
T |
|
| Q |
301 |
cagaaaagtccaagacagagcaacatcaaactatcctataacctaaataactcataatagtaatgcaactgataattaacttagcaaaccagtaattaac |
400 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
16443481 |
cagaaaagtccaagacagagcaagatcaaactaacctataacctaactaactcataacagtaatgcaaccgatagttaacttagcaaaccagtaattaac |
16443382 |
T |
|
| Q |
401 |
ataaccagatagtaatgctac |
421 |
Q |
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|||||||| |||||||||||| |
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| T |
16443381 |
ataaccagttagtaatgctac |
16443361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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