View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1038_low_6 (Length: 421)
Name: NF1038_low_6
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1038_low_6 |
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| [»] chr1 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 44285863 - 44286273
Alignment:
| Q |
11 |
cagagacggattgagtactaaagcttcttaacaattaaacttatgttaattgagaagagaacctacaagggccggcccaagggtaaatccactaaagccc |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44285863 |
cagagatggattgagtactaaagcttcttaacaattaaacttatgttaattgagaagagaacctacaagggccggcccaagggtaaatccactaaagccc |
44285962 |
T |
|
| Q |
111 |
ttgttttcggcccaccaacaaaaatttatctgtcttcagttttataaagnnnnnnnnggcatcatatgcggataagaaagtcccgtgttataaaatttga |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44285963 |
ttgttttcggcccaccaacaaaaatttatctgtcttcagttttataaagaaaaaaaaggcatcatatgcggataaaaaagtcccgtgttataaaatttga |
44286062 |
T |
|
| Q |
211 |
tttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaaagcctaattgaatacagaaaagtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286063 |
tttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaaagcctaattgaatacagaaaagtc |
44286162 |
T |
|
| Q |
311 |
caagacagagcaacatcaaactatcctataacctaaataactcataatagtaatgcaactgataattaacttagcaaaccagtaattaacataaccagat |
410 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| | |
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| T |
44286163 |
caagatagagcaacatcaaactatcctataacctaaataactcataacagtaatgcacctgatagttaacttagcaaaccagtaattaacataaccagtt |
44286262 |
T |
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| Q |
411 |
agtaatgctac |
421 |
Q |
| |
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||||||||||| |
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| T |
44286263 |
agtaatgctac |
44286273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 44070150 - 44069740
Alignment:
| Q |
11 |
cagagacggattgagtactaaagcttcttaacaattaaacttatgttaattgagaagagaacctacaagggccggcccaagggtaaatccactaaagccc |
110 |
Q |
| |
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||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | |
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| T |
44070150 |
cagagacagattgagtactaaagctccttagaaattaaacttatgttaattgagaagagaacctacacgggccggcccaagggtaagaccactaaagctc |
44070051 |
T |
|
| Q |
111 |
ttgttttcggcccaccaacaaaaatttatctgtcttcagttttataaagnnnnnnnnggcatcatatgcggataagaaa-gtcccgtgttataaaatttg |
209 |
Q |
| |
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||| |||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||| || ||||| ||| ||||||| |||||| ||||| |
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| T |
44070050 |
ttgctttcggcccaccaacacaaatttatttgtcttcagttttataaagaaaaaaa-ggcctcatacgcagataaaaaaagtcccgtattataatatttg |
44069952 |
T |
|
| Q |
210 |
atttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaaagcctaattgaatacagaaaagt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| || ||||||||||||| |
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| T |
44069951 |
atttaagcctcaccgaatattgaaaattattgggccggccctggaacttaccataagagagaaactaatccaaagtaagcctatttaaatacagaaaagt |
44069852 |
T |
|
| Q |
310 |
ccaagacagagcaacatcaaactatcctataacctaaataactcataatagtaatgcaactgataattaacttagcaaaccagtaattaacataaccaga |
409 |
Q |
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|||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
44069851 |
ccaagacagagcaagatcaaactaacctataacctaactaactcataacagtaatgcaaccgatagttaacttagcaaaccagtaattaacataaccagt |
44069752 |
T |
|
| Q |
410 |
tagtaatgctac |
421 |
Q |
| |
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|||||||||||| |
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| T |
44069751 |
tagtaatgctac |
44069740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 187 - 421
Target Start/End: Original strand, 44083824 - 44084058
Alignment:
| Q |
187 |
aaagtcccgtgttataaaatttgatttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaa |
286 |
Q |
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|||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
44083824 |
aaagtcccgtattataatatttgatttaagcctcaccaaatattgaaaattattgggccggccctggaacttaccataagagagaaactaatccaaagta |
44083923 |
T |
|
| Q |
287 |
agcctaattgaatacagaaaagtccaagacagagcaacatcaaactatcctataacctaaataactcataatagtaatgcaactgataattaacttagca |
386 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||| |||| ||||||||||| |
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| T |
44083924 |
agcctaattgaatacagaaaagtccaagacagagcaagatcaaactaacctataacctaactaactcataacagtaatgcaaccgatagttaacttagca |
44084023 |
T |
|
| Q |
387 |
aaccagtaattaacataaccagatagtaatgctac |
421 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
44084024 |
aaccagtaattaacataaccagttagtaatgctac |
44084058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 146
Target Start/End: Complemental strand, 47442538 - 47442470
Alignment:
| Q |
78 |
agggccggcccaagggtaaatccactaaagcccttgttttcggcccaccaacaaaaatttatctgtctt |
146 |
Q |
| |
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||||||||| |||||||| ||||||||||| | | ||| || ||||||||||||||||||||||||| |
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| T |
47442538 |
agggccggcttaagggtaaggccactaaagccatagctttaggtccaccaacaaaaatttatctgtctt |
47442470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 421
Target Start/End: Complemental strand, 16443773 - 16443361
Alignment:
| Q |
11 |
cagagacggattgagtactaaagcttcttaacaattaaacttatgttaattgagaagagaacctacaagggccggcccaagggtaaatccactaaagccc |
110 |
Q |
| |
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||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| | |
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| T |
16443773 |
cagagacagattgagtactaaagctccttagaaattaaacttatgttaattgagaagagaacctacacgggccggcccaagggtaagaccactaaagctc |
16443674 |
T |
|
| Q |
111 |
ttgttttcggcccaccaacaaaaatttatctgtcttcagttttataaagnnnnnnnnggcatcatatgcggataagaaa-gtcccgtgttataaaatttg |
209 |
Q |
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||| |||||||||||||||| |||||||| ||||||||||||||||||| ||| ||||| || ||||| ||| ||||||| |||||| ||||| |
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| T |
16443673 |
ttgctttcggcccaccaacacaaatttatttgtcttcagttttataaagaaaaaaaaggcctcatacgcagataaaaaaagtcccgtattataatatttg |
16443574 |
T |
|
| Q |
210 |
atttaagcctcaccgaatattgaaaattattgggccggccctggaacctaccataagagagaaactaatccaaacaaagcctaattgaa-tacagaaaag |
308 |
Q |
| |
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|||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| || |||||||||| |
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|
| T |
16443573 |
atttaagcctcaccaantattgaaaattattgggccggccctggaacttaccataagagagaaactaatccaaagtaagcctaatttaaatacagaaaag |
16443474 |
T |
|
| Q |
309 |
tccaagacagagcaacatcaaactatcctataacctaaataactcataatagtaatgcaactgataattaacttagcaaaccagtaattaacataaccag |
408 |
Q |
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||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
16443473 |
tccaagacagagcaagatcaaactaacctataacctaactaactcataacagtaatgcaaccgatagttaacttagcaaaccagtaattaacataaccag |
16443374 |
T |
|
| Q |
409 |
atagtaatgctac |
421 |
Q |
| |
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|||||||||||| |
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| T |
16443373 |
ttagtaatgctac |
16443361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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