View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1038_low_7 (Length: 405)
Name: NF1038_low_7
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1038_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 59 - 397
Target Start/End: Complemental strand, 9146744 - 9146407
Alignment:
| Q |
59 |
attcaaatattcattcattactcagagattgtttcccctcaattatttcatagattttcaattatttcacagactggttcctcaaaattcattaattttc |
158 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||||||| ||| || |||||||| |||||| |
|
|
| T |
9146744 |
attccaatattcattcattactcacagactgtttcctctcaattatttcacagattttcaattatttcacagactgcttcttctcaattcattcattttc |
9146645 |
T |
|
| Q |
159 |
cttgttcattcatagactgtttcccctcaattatttcacagattttcaatctgatatatnnnnnnnctaatggttgattttgttgtgcccattcaaaatc |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9146644 |
cttgttcattcatagactgtttcccctcaattatttcacagattttcaatctgatatataaaaaaactaatggttgattttgttgtgcccattcaaaatc |
9146545 |
T |
|
| Q |
259 |
gttgaacctctctgtctctcaccttcgatttctttttagtaaaaagctctctttgatttcttttttagtgttcgtagaactcagattcaagaattaggga |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9146544 |
gttgaacctctctgtctctcaccttcgatttctttttagtaaaaagctctctttgatttcttttttagtgttcgtagaactcagattcaagaattaggga |
9146445 |
T |
|
| Q |
359 |
tttaaagctctttgtctctcacctctattccttcatctc |
397 |
Q |
| |
|
||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
9146444 |
ttt-aatctctttgtatctcacctctattccttcatctc |
9146407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 58 - 397
Target Start/End: Complemental strand, 37916090 - 37915751
Alignment:
| Q |
58 |
aattcaaatattcattcattactcagagattgtttcccctcaattatttcatagattttcaattatttcacagactggttcctcaaaattcattaatttt |
157 |
Q |
| |
|
||||| ||||||||||||||||||| ||| | ||||| ||||||||||||| |||| |||||||||||||||||||| |||||| |||||||| ||||| |
|
|
| T |
37916090 |
aattccaatattcattcattactcacagactatttcctctcaattatttcacagatcttcaattatttcacagactgcttcctctcaattcattcatttt |
37915991 |
T |
|
| Q |
158 |
ccttgttcattcatagactgtttcccctcaattatttcacagattttcaatctgatatatnnnnnnnctaatggttgattttgttgtgcccattcaaaat |
257 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
37915990 |
ccttgttcatttatagactgtttcccatcaattatttcacagattttcaatctgatatataaaaaaactaatggttgattttgttgtgcgcattcaaaat |
37915891 |
T |
|
| Q |
258 |
cgttgaacctctctgtctctcaccttcgatttctttttagtaaaaagctctctttgatttcttttttagtgttcgtagaactcagattcaagaattaggg |
357 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37915890 |
tgatgaacctctctgtctctcaccttcgatttctttttagtaaaaagctctctttgatttcttttttagtgttcgtagaactcagattcaagaattaggg |
37915791 |
T |
|
| Q |
358 |
atttaaagctctttgtctctcacctctattccttcatctc |
397 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
37915790 |
atttaaagttctttatctctcgcctctattccttcatctc |
37915751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University