View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1038_low_8 (Length: 372)

Name: NF1038_low_8
Description: NF1038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1038_low_8
NF1038_low_8
[»] chr5 (1 HSPs)
chr5 (20-205)||(14308543-14308728)
[»] chr3 (1 HSPs)
chr3 (28-200)||(2467448-2467620)
[»] chr6 (6 HSPs)
chr6 (26-96)||(7872259-7872329)
chr6 (20-96)||(7815417-7815493)
chr6 (66-223)||(14438152-14438310)
chr6 (25-79)||(7820006-7820060)
chr6 (28-96)||(7818355-7818423)
chr6 (25-90)||(7805793-7805858)
[»] scaffold1089 (1 HSPs)
scaffold1089 (20-232)||(510-723)
[»] chr1 (2 HSPs)
chr1 (26-124)||(37996590-37996688)
chr1 (20-123)||(28720055-28720158)
[»] scaffold1377 (1 HSPs)
scaffold1377 (20-124)||(1343-1447)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 14308543 - 14308728
Alignment:
Q  20 caccacagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatga 119  Q
    |||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||    
T  14308543 cacctcagatcatgtactattttaaactttcaatgctatggaaatgatcttcgatttgcaacatatattttgcagaacgcaagacgtttgcaagacatga 14308642  T
Q  120 caatcaacattactactcacccctcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctgtccaaaaatt 205  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14308643 caatcaacattactacttacccttcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctatccaaaaatt 14308728  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 2467620 - 2467448
Alignment:
Q  28 atcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatcaac 127  Q
    ||||||||| |||||||| ||| || | |  | ||||||||||||||||||| ||||||| ||||||||    |||  ||||||| ||||||||||| ||    
T  2467620 atcatgtacaattttaaattttgaagggtctgcaaatgatcttcgatttgcaacatatatattgcagaatgggagaattttacaaaacatgacaatcgac 2467521  T
Q  128 attactactcacccctcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctgtccaa 200  Q
     |||| |||  | |||||||| | | |||||||| |||||| ||||| || |||| ||||||||| |||||||    
T  2467520 gttacaactagctcctcaaatggaaagcttttggaaaagagtcaaataattgaagaattatcctcttgtccaa 2467448  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 7872259 - 7872329
Alignment:
Q  26 agatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 96  Q
    ||||||||||||||||||||||| ||  |||  | ||||||||||||||||||| ||||||||||||||||    
T  7872259 agatcatgtactattttaaacttccatggctcagcaaatgatcttcgatttgcaacatatattttgcagaa 7872329  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 7815417 - 7815493
Alignment:
Q  20 caccacagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 96  Q
    |||| |||||||||||||||||||||||| ||| |||  | |||||||||||||||| ||  |||||||||||||||    
T  7815417 cacctcagatcatgtactattttaaacttacaaggctcggaaaatgatcttcgatttacaaaatatattttgcagaa 7815493  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 223
Target Start/End: Complemental strand, 14438310 - 14438152
Alignment:
Q  66 atcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatcaacattactactcacccctcaaattggatgcttttgggaaa 165  Q
    ||||| |||||||| ||||||||||||||||  | || | ||||||||| ||||||||| || | |||||| |  ||||||     |||||||||  ||     
T  14438310 atcttagatttgcatcatatattttgcagaatgcgaggcttttacaagatatgacaatcgacttaactactaagtcctcaataaacatgcttttgaaaag 14438211  T
Q  166 gagacaaattatagaaggattatcctcctgtccaaaaatttctcaag-atgtaaacttt 223  Q
    ||| ||||||||||||| ||||||||| |||||||  ||||||| || |||||||||||    
T  14438210 gagtcaaattatagaagaattatcctcttgtccaaggatttctccagcatgtaaacttt 14438152  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 7820060 - 7820006
Alignment:
Q  25 cagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgca 79  Q
    ||||||||||||||||||||||||| || |||  | |||||||||||||||||||    
T  7820060 cagatcatgtactattttaaactttgaaggctcggaaaatgatcttcgatttgca 7820006  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 7818355 - 7818423
Alignment:
Q  28 atcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 96  Q
    ||||||||||||||||||||||||| |||    |||| ||||||||||| || ||||||||||| ||||    
T  7818355 atcatgtactattttaaactttcaaggcttgataaattatcttcgatttacaacatatattttgaagaa 7818423  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 90
Target Start/End: Complemental strand, 7805858 - 7805793
Alignment:
Q  25 cagatcatgtactattttaaactttcaatgctgcgga-aatgatcttcgatttgcagcatatatttt 90  Q
    ||||||||||||||||||||||||| |  ||| |||| ||||||||||||||||||  |||||||||    
T  7805858 cagatcatgtactattttaaactttgacggct-cggataatgatcttcgatttgcaaaatatatttt 7805793  T

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Target: scaffold1089 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 723 - 510
Alignment:
Q  20 caccacagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatga 119  Q
    |||| |||||||||||| |||||||||||| || | |  |  ||| | |||| ||||||| |||||||| |||||||  | ||   ||||||||| ||||    
T  723 cacctcagatcatgtacaattttaaactttgaaggatcggctaataaccttctatttgcaacatatattctgcagaatgctaggtttttacaagatatga 624  T
Q  120 caatcaacattactactcacccctcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctgtccaaaaatttctcaag-atgtaa 218  Q
    ||||| || ||||||||| | ||||||||   |||||||| | || |||  |||||||||||| ||| ||||| |||||||  ||||||| || ||||||    
T  623 caatcgacgttactactcgctcctcaaatgaaatgcttttagaaaggagtgaaattatagaagaattgtcctcttgtccaaggatttctccagcatgtaa 524  T
Q  219 acttttatttgaat 232  Q
    ||||  ||||||||    
T  523 acttacatttgaat 510  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 37996688 - 37996590
Alignment:
Q  26 agatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatc 124  Q
    |||||||||||||||||||||||| || |||  |   |||||||||||||||||  |||||||||||| ||  |||| | |||||||||||||| ||||    
T  37996688 agatcatgtactattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgagaatc 37996590  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 28720158 - 28720055
Alignment:
Q  20 caccacagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatga 119  Q
    |||| ||| ||||||||||||||||| ||| || |||  | ||||||||| |||||||||   |||||| |||||||  | |||| ||||||||| ||||    
T  28720158 cacctcaggtcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaaatga 28720059  T
Q  120 caat 123  Q
    ||||    
T  28720058 caat 28720055  T

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Target: scaffold1377 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 1447 - 1343
Alignment:
Q  20 caccacagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatga 119  Q
    |||| |||||| ||||| |||||||||||| || |||  |  ||| |||||||||||||| ||||||||||||||||  | || | ||||||||| ||||    
T  1447 cacctcagatcctgtacaattttaaactttgaaggctcggccaataatcttcgatttgcaacatatattttgcagaatgcgaggcttttacaagatatga 1348  T
Q  120 caatc 124  Q
    |||||    
T  1347 caatc 1343  T

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