View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_high_3 (Length: 402)
Name: NF10390_high_3
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 385
Target Start/End: Original strand, 20519019 - 20519397
Alignment:
| Q |
7 |
aaggatttatttgatagttattacatgataaagatacaataggagatgaagttcgataaggatagacccaagttaattatcatataatgtgcttgatgta |
106 |
Q |
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| T |
20519019 |
aaggatctatttgataattattacatgataaagatacaataggatatgaagttcgataaggatagacccaagttaattatcatataatgtgcttgatgta |
20519118 |
T |
|
| Q |
107 |
cacattactatgatgttttttggacaagtaatctgggtactctccaattaccatttaaaattaaatctcaaacttttacattaaataattgcttacatcc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||| ||| |||| || | |
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| T |
20519119 |
cacattactatgatgttttttggacaagtaatctgggtactctccaattaccatttaaattgaaatctgaaacttttgcattaaagaatcccttaaatgc |
20519218 |
T |
|
| Q |
207 |
aaggaaatattgagcatgtcaatattcaaacaattgggaacttaatattgatgaaatttactattgcatgtcactttgtgacttaagatccagtatcaat |
306 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519219 |
aagggaatattgagcatgtcaatattcaaacaattgggaacttaatattgatgaaatttactattgcatgtcactttgtgacttaagatccagtatcaat |
20519318 |
T |
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| Q |
307 |
tagatatcaaattcaatatttaagcatttgtcatttaaaataaagaattgaatatgtgttggttaggcatgataagttt |
385 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20519319 |
tagatatcaaattcaatatttaagcatttttcattcaaaataaagaattgattatgtgttggttaggcatgataagttt |
20519397 |
T |
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