View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_high_9 (Length: 358)
Name: NF10390_high_9
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 89 - 347
Target Start/End: Original strand, 41896534 - 41896792
Alignment:
| Q |
89 |
agaagagtgttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaac |
188 |
Q |
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| T |
41896534 |
agaagagtgttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaac |
41896633 |
T |
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| Q |
189 |
tgtaacacaattcataaaataatcaataatagtaaatatgcattcaaatattttatgaagaatatgataaaaattgctaaatttatttatgagaaccgta |
288 |
Q |
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| T |
41896634 |
tgtaacacaattcataaaataatcaataatagtaaatatgcattcaaatactttatgaagaatatgataaaaattgctaaatttatttatgagaaacgta |
41896733 |
T |
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| Q |
289 |
ttacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttctt |
347 |
Q |
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| T |
41896734 |
ttacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttctt |
41896792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 98 - 190
Target Start/End: Complemental strand, 41829151 - 41829059
Alignment:
| Q |
98 |
ttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
190 |
Q |
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| T |
41829151 |
ttactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41829059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 41885561 - 41885653
Alignment:
| Q |
98 |
ttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
190 |
Q |
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| T |
41885561 |
ttactgacttctttgcagaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
41885653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 41891796 - 41891943
Alignment:
| Q |
89 |
agaagagtgttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaac |
188 |
Q |
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|||||||||||||| |||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
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| T |
41891796 |
agaagagtgttactaactcggatctagaagaccagaggcccacttcaaatctttctaagcagaatttcataaattcttcagtaaatggtctcttgtaacc |
41891895 |
T |
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| Q |
189 |
tgtaacacaattcataaaataatcaataatagtaaatatgcattcaaa |
236 |
Q |
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| T |
41891896 |
tttaacacagttcagaaaataataatcaatgataagtatgcattcaaa |
41891943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 41901575 - 41901660
Alignment:
| Q |
97 |
gttactgactccattgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctctt |
182 |
Q |
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| T |
41901575 |
gttactgactccattgcagaagaccagagtcccacttcaaatctttccaagcagaatttaataaattcttcgctaaatggcctctt |
41901660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 34453822 - 34453742
Alignment:
| Q |
110 |
ttgcagaagaccaaacccccacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgtaaactg |
190 |
Q |
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| T |
34453822 |
ttgcacaagtccaaatcccaacttcaaatctttctaagcagaatttcataaattcttcactaaatggcctcttgaaaactg |
34453742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 276 - 353
Target Start/End: Original strand, 41893545 - 41893622
Alignment:
| Q |
276 |
tatgagaaccgtattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttcttctcact |
353 |
Q |
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| T |
41893545 |
tatgagaaatgtattacggagaaagtaacgatattcgtgatcagcagttcgagactttggaattgctttcttatcact |
41893622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 41901773 - 41901838
Alignment:
| Q |
287 |
tattacggagaaagtaacgatatttgtaatcagcggtccgagactttggaattgctttcttctcac |
352 |
Q |
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| T |
41901773 |
tattacgtagaaagtaaggatatttgtaatcagcagttcgagactttggaattgctttcttatcac |
41901838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 41896464 - 41896497
Alignment:
| Q |
19 |
tgcatttagtgtaacagaagggatacagtgtaag |
52 |
Q |
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| T |
41896464 |
tgcatttagtgtaacaaaagggatacagtgtaag |
41896497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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