View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_low_12 (Length: 354)
Name: NF10390_low_12
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 49094567 - 49094243
Alignment:
| Q |
11 |
cagagattgcatagaggagatgcacataacttcatttgcagatacattgaatccacatcttccaccagatttcatacagtcgtgacatttctcttcatca |
110 |
Q |
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| T |
49094567 |
cagagattgcatagaggagatgcacataacttcatttgcagatacattgaatccacatcttccaccagatttcatgcagtcgtgacatttctcttcatca |
49094468 |
T |
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| Q |
111 |
tccacaccactctagctaatctcaaatccctgctctaaagtaagtttgcttgtgaatgaagaagtattcaggctaggaacaaagacctttttcttacact |
210 |
Q |
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| T |
49094467 |
tccacaccactctagctaatctcaaatcccttctctaaagtaagtttgtttgtgaatgaag---tattcaggctaggaacaaagacctttttcttacact |
49094371 |
T |
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| Q |
211 |
tgagaacattaaaatccacaaccttagtgcttaaaactaagtacgcaaattgataattaccatccttggagcacatcatctcttcaaagatttctaaagt |
310 |
Q |
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| T |
49094370 |
tgagaacatcaaaatccacaaccttagtgcttaaaactaagtacgcaaattgataattaccatccttggagcacatcatctcttcaaagatttctaaagt |
49094271 |
T |
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| Q |
311 |
catcggataagaaattcgaccaggaaga |
338 |
Q |
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||||||| |||||||||||||||||||| |
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| T |
49094270 |
catcggacaagaaattcgaccaggaaga |
49094243 |
T |
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