View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_low_13 (Length: 325)
Name: NF10390_low_13
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 106 - 309
Target Start/End: Complemental strand, 28131721 - 28131518
Alignment:
| Q |
106 |
ggggtgtttgtttcatggatacaaaacatattcccaggaattcttggatgggaattaagattccagtgtttgttacggtggaacgaacaattattcccag |
205 |
Q |
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| T |
28131721 |
ggggtgtttgtttcatggatacaaaacatattcccaggaattcttggatgggaattaagattccagtgtttgttacggtggaacgaacaattattcccag |
28131622 |
T |
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| Q |
206 |
aaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaacttatattcccaggtaatataagcaa |
305 |
Q |
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| T |
28131621 |
gaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaacttatattcccaggtaatataagcaa |
28131522 |
T |
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| Q |
306 |
ttat |
309 |
Q |
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|||| |
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| T |
28131521 |
ttat |
28131518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 104 - 309
Target Start/End: Complemental strand, 9309086 - 9308881
Alignment:
| Q |
104 |
agggggtgtttgtttcatggatacaaaacatattcccaggaattcttggatgggaattaagattccagtgtttgttacggtggaacgaacaattattccc |
203 |
Q |
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| T |
9309086 |
aggggatgtttgtttcatggatacaaaacatattcctaggaattcttggatgggaattaagattccagtgtttgttacggtggaacgaacaattattccc |
9308987 |
T |
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| Q |
204 |
agaaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaacttatattcccaggtaatataagc |
303 |
Q |
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| T |
9308986 |
aggaaataattatgcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaacttatattcccaggtaatataagc |
9308887 |
T |
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| Q |
304 |
aattat |
309 |
Q |
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|||||| |
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| T |
9308886 |
aattat |
9308881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 117 - 309
Target Start/End: Original strand, 35338566 - 35338758
Alignment:
| Q |
117 |
ttcatggatacaaaacatattcccaggaattcttggatgggaattaagattccagtgtttgttacggtggaacgaacaattattcccagaaaataattat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35338566 |
ttcatggatacaaaacatattcccaggaattcttggatgggaattaagattccagtgtttgttacggtggaacgaacaattattcccaggaaataattat |
35338665 |
T |
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| Q |
217 |
gcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaacttatattcccaggtaatataagcaattat |
309 |
Q |
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| T |
35338666 |
gcccgggaaagatttttccccacattgtctggctttctattcccagcaaatagagatgggaaacttatattcccaggtaatataagcaattat |
35338758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 26240048 - 26240142
Alignment:
| Q |
12 |
agagagatgtgatatatgtgataagttgataatgtgatnnnnnnngaaga---gataaagagttgatgaagtgttgaatgaatgtaggaaaattt |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||| || | ||||||||| | |||||||||||||||||||||||||||||| |
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| T |
26240048 |
agagtgatgtgatatatgtgataagttgataatgtgataaaaaaaaaaaaaaagataaagagataatgaagtgttgaatgaatgtaggaaaattt |
26240142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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