View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10390_low_14 (Length: 314)

Name: NF10390_low_14
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10390_low_14
NF10390_low_14
[»] chr3 (1 HSPs)
chr3 (10-299)||(11529914-11530203)
[»] chr4 (3 HSPs)
chr4 (10-298)||(29953950-29954238)
chr4 (18-274)||(51370226-51370479)
chr4 (177-220)||(47073361-47073404)
[»] chr2 (5 HSPs)
chr2 (10-298)||(20492085-20492373)
chr2 (62-228)||(1354472-1354638)
chr2 (62-246)||(1361340-1361524)
chr2 (158-221)||(1357248-1357311)
chr2 (7-47)||(1361554-1361594)
[»] chr6 (3 HSPs)
chr6 (7-299)||(14588372-14588664)
chr6 (7-299)||(14622030-14622322)
chr6 (63-259)||(12845949-12846145)
[»] chr1 (1 HSPs)
chr1 (177-220)||(26970562-26970605)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 299
Target Start/End: Complemental strand, 11530203 - 11529914
Alignment:
Q  10 atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagccgga 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  11530203 atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagctgga 11530104  T
Q  110 acaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcaggctttgatgttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11530103 acaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcagactttgatgttt 11530004  T
Q  210 tgagtatctcagtaacatcgacttggagaccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctctg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11530003 tgagtatctcagtaacatcgacttggagaccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctctg 11529914  T

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Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 29954238 - 29953950
Alignment:
Q  10 atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagccgga 109  Q
    |||||||| |||||  |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||  | ||||||||||||||||| ||     
T  29954238 atgaatggatgtttgaaaaggaacccactttggtgggctacacctatctatgttgatttgatcctttggtggatttgataaacatatgttccaagctggg 29954139  T
Q  110 acaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcaggctttgatgttt 209  Q
    |||| | ||||||| ||||||||||| || |||||||| ||||| |||||||||||||||||| || ||||||| |||||||||||||||||||| ||||    
T  29954138 acaacgttgtaatgagcacaaggaatgttgaggcttttcgctattgacggtaaccaatcagctgcataatcatataaaacccaatcaggctttgaagttt 29954039  T
Q  210 tgagtatctcagtaacatcgacttggagaccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctct 298  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||  | |||| ||||||||||||||||||||||||    
T  29954038 tgagtatctcagtaacatcgtcttggagaccgtcataagccaatttaagataaccaagcatgttaaatggaacattttgagtgctctct 29953950  T

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Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 51370226 - 51370479
Alignment:
Q  18 ttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagccggaacaatgct 117  Q
    ||||||||||||||| |||||||||||||||| || ||| || |     ||||||| | ||||||||||||||||||| |||| |||| |  |  || ||    
T  51370226 ttgtttcgaaaggaagccactttggtgggctacacatgtttacggc---ttgatccctaggtggattaaagaaacatacgttcaaagctgcgagtatact 51370322  T
Q  118 gtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcaggctttgatgttttgagtatc 217  Q
    |||||| ||||||||||| || ||||||||||| || | ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||     
T  51370323 gtaatgagcacaaggaatgttaaggcttttggcaattgccggcaaccaatcagctgcacaatcatagaaaacccaatcaggctttgaagttttgagtata 51370422  T
Q  218 tcagtaacatcgacttggagaccgtcataagccaacttaaggtaaccagtcttgttt 274  Q
    |||||||||| | |||| ||||||||||||||||||||||| |||||| || |||||    
T  51370423 tcagtaacattgtcttgtagaccgtcataagccaacttaagataaccaatcatgttt 51370479  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 47073404 - 47073361
Alignment:
Q  177 aatcatagaaaacccaatcaggctttgatgttttgagtatctca 220  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||    
T  47073404 aatcgtagaaaacccaatcaggttttgatgttttgagaatctca 47073361  T

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Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 20492373 - 20492085
Alignment:
Q  10 atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagccgga 109  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||| ||  ||||||||||||||||||||||||||   ||||||||||||||||  ||     
T  20492373 atgaatgtttgttttgaaaggaacccactttggtggactatacctatcattgttgatttgatcctttggtggattagcaaaacatatgttccaagatggg 20492274  T
Q  110 acaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcaggctttgatgttt 209  Q
    || |   || |||| ||||| | ||| || |||||||||||||| || |||| ||||||| || ||  ||||||||||||||||||||||||||| ||||    
T  20492273 actacattgaaatgagcacatgaaatgttaaggcttttggctattgaaggtacccaatcacctgcatgatcatagaaaacccaatcaggctttgaagttt 20492174  T
Q  210 tgagtatctcagtaacatcgacttggagaccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctct 298  Q
    | ||||| |||||||||| | |||| | ||| ||||||||||| ||||||| |||| |||||| ||||||||| ||  |||||||||||    
T  20492173 taagtatttcagtaacatggtcttgaaaaccatcataagccaatttaaggtgaccattcttgtctaatggaaccttaagagtgctctct 20492085  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 1354638 - 1354472
Alignment:
Q  62 ttgatttgatcctttggtggattaaagaaacatatgttccaagccggaacaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggta 161  Q
    |||||||||||||| ||| ||| ||| ||||||||||||||||| ||    |||||||||||  || |||  || || |||||||| ||||| |  | ||    
T  1354638 ttgatttgatccttaggtcgatcaaaaaaacatatgttccaagctggtgttatgctgtaatgaacagaagctatgtttaggcttttagctattggtgcta 1354539  T
Q  162 accaatcagctacacaatcatagaaaacccaatcaggctttgatgttttgagtatctcagtaacatc 228  Q
    ||||| |||   || |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  1354538 accaaacagtaccataatcatagaaaacccaatcaggttttgatgttttgagaatctcagtaacatc 1354472  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 246
Target Start/End: Complemental strand, 1361524 - 1361340
Alignment:
Q  62 ttgatttgatcctttggtggattaaagaaacatatgttccaagccggaacaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggta 161  Q
    |||| ||||||||||||||||| |||||||||| |||||||||| ||    ||| ||||||| |||  ||  || || |||||||| ||||| |  |  |    
T  1361524 ttgacttgatcctttggtggatcaaagaaacatttgttccaagctggtgttatgttgtaatgagcagcagctatgttgaggcttttagctattggtgcca 1361425  T
Q  162 accaatcagctacacaatcatagaaaacccaatcaggctttgatgttttgagtatctcagtaacatcgacttggagaccgtcata 246  Q
    ||||| ||  | || |||||||||||||||||||||| |||||||||||||| ||||||||||||||  |||| ||||| |||||    
T  1361424 accaaccacttgcaaaatcatagaaaacccaatcaggttttgatgttttgagaatctcagtaacatcatcttgaagaccttcata 1361340  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 1357311 - 1357248
Alignment:
Q  158 ggtaaccaatcagctacacaatcatagaaaacccaatcaggctttgatgttttgagtatctcag 221  Q
    |||||||||  |||| || |||||||||||||||||||||| ||||| ||||||||||||||||    
T  1357311 ggtaaccaactagctgcaaaatcatagaaaacccaatcaggatttgaagttttgagtatctcag 1357248  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 1361594 - 1361554
Alignment:
Q  7 gagatgaatggttgtttcgaaaggaacccactttggtgggc 47  Q
    |||||||||||||||||  ||||||||||| ||||||||||    
T  1361594 gagatgaatggttgtttgaaaaggaacccattttggtgggc 1361554  T

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Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 14588664 - 14588372
Alignment:
Q  7 gagatgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagcc 106  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||||  |||||||| | || | |||  ||||||||||||||||   | ||||| |||     
T  14588664 gagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaagttccgagct 14588565  T
Q  107 ggaacaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcaggctttgatg 206  Q
    |   | ||||||||||  ||||||||||| || |  || ||||||||||| ||||||||||| | |||  ||||| ||||||||||||||||||| || |    
T  14588564 gcgcctatgctgtaatacgcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaag 14588465  T
Q  207 ttttgagtatctcagtaacatcgacttggagaccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctctg 299  Q
    |||||| |||||||||||||  | |||||| ||| |||||||| |||||||||||||||||   |||||| ||||||||||||||||| ||||    
T  14588464 ttttgaatatctcagtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctg 14588372  T

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Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 14622322 - 14622030
Alignment:
Q  7 gagatgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagcc 106  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||||  |||||||| | || | |||  |||||||||||||||||  | |||||||||     
T  14622322 gagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaacccaagttccaagct 14622223  T
Q  107 ggaacaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcaggctttgatg 206  Q
    |   | | ||||||||  ||||||||||| || |  || |||| |||||||||||||||||| | |||   |||| ||||||||||||||||||| || |    
T  14622222 gcggctacgctgtaatacgcacaaggaatgttgaaactcttggttatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaag 14622123  T
Q  207 ttttgagtatctcagtaacatcgacttggagaccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctctg 299  Q
    ||||||||||||| ||||||  | |||||| ||| |||||||| |||||||||||||||||   |||||| ||||||||||||||||| ||||    
T  14622122 ttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctg 14622030  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 259
Target Start/End: Complemental strand, 12846145 - 12845949
Alignment:
Q  63 tgatttgatcctttggtggattaaagaaacatatgttccaagccggaacaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaa 162  Q
    ||||||||||||| |||||||  | |||| || |||||||||| || |  ||  | ||||| |||||||| || ||||  ||||||||||| ||||||||    
T  12846145 tgatttgatccttaggtggatccatgaaaaatgtgttccaagctggtattatattataatgagcacaagggatgttcaaacttttggctattgacggtaa 12846046  T
Q  163 ccaatcagctacacaatcatagaaaacccaatcaggctttgatgttttgagtatctcagtaacatcgacttggagaccgtcataagccaacttaagg 259  Q
    ||| || |   || |||||||||||||||| ||||| |||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  12846045 ccattcggtagcaaaatcatagaaaacccagtcagggtttgatgttttgagtatctcagtaacatcatcttggagaccatcataagccaacttaagg 12845949  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 26970562 - 26970605
Alignment:
Q  177 aatcatagaaaacccaatcaggctttgatgttttgagtatctca 220  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||    
T  26970562 aatcgtagaaaacccaatcaggttttgatgttttgagaatctca 26970605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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