View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_low_16 (Length: 289)
Name: NF10390_low_16
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 4389260 - 4389517
Alignment:
| Q |
14 |
aaagtttgatcatgtagaggtggagaaagggttatctatggagtcggctagagttttggttcacacaaaactcatgccattcattgaagatcgattcttt |
113 |
Q |
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| T |
4389260 |
aaagattgatcatgtagaggtggagaaagggttatctatggagtcagctagagttttggttcacacaaaactcatgccattcattgaagatcgattcttt |
4389359 |
T |
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| Q |
114 |
atggtgtgatgc-atttgctgtctcgagaaagtgataaggatagcctatgaagtatgttgaaagttgaaaatgcttctgcaaaaactgttgaaccctcca |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4389360 |
atggtgtgatgccatttgctgtctcgagaaagtgataaggatagcctatgaagtatgttgaaagttgaaaatgcttctgcaaaaactgttgaaccctcca |
4389459 |
T |
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| Q |
213 |
agtgttatgaactagggcatgaattgggagttattaaaacaagggaaagacacgttaa |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4389460 |
agtgttatgaactagggcatgaattgggagttattaaaacaagggaaagacacgttaa |
4389517 |
T |
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