View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_low_18 (Length: 267)
Name: NF10390_low_18
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 89 - 257
Target Start/End: Complemental strand, 45169099 - 45168932
Alignment:
| Q |
89 |
ttgttcaaatgaaagggtccaagtagtattgaagtataaaaaattgcatctctaaatgtcctacccataccagaattaaacatcttaaggtagttaacaa |
188 |
Q |
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| T |
45169099 |
ttgttcaaatcaaagggtccaagctgtattgaaatatctaaaattgcatcactaaatgtcctagccataccagaattaaacatctca-ggtagttaacag |
45169001 |
T |
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| Q |
189 |
ataagaatatttgtttcatacaatacaataggtgaagacaatgcaaatattagtgcttcacaggttctg |
257 |
Q |
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| T |
45169000 |
ataagaatatttgtttcatacaatagaataggtgaagacaatgcaaatattagtgcttcataggttctg |
45168932 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 45169365 - 45169302
Alignment:
| Q |
18 |
ctatgtgtttgaactttggagtaaaaatcttaactaaacttaatattattacaattatgcagcaa |
82 |
Q |
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| T |
45169365 |
ctatgtgtttgaactttggagtaaaaatc-taactaaaataaatataattacaattacgcagcaa |
45169302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 24123690 - 24123771
Alignment:
| Q |
176 |
aggtagttaacaaataagaatatttgtttcatacaatacaataggtgaagacaatgcaaatattagtgcttcacaggttctg |
257 |
Q |
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| T |
24123690 |
aggtagttaacaaataagaatatttgtttcatacaatacaataggtgaagacaatgcaaatattagtgcttcataggttctg |
24123771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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