View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_low_19 (Length: 249)
Name: NF10390_low_19
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 17319858 - 17320075
Alignment:
| Q |
18 |
cttcacactctcaacagcaccttgagccatgttcttcacctgctctccagtctgcaataagaagataaacttttaacaatatgacacatcaataaaagaa |
117 |
Q |
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| T |
17319858 |
cttcacactctcaacagcaccttgagccatgtttttcacctgctctccagtctgcaataagaagataaacttttaacaatatgacacatcaataaaagaa |
17319957 |
T |
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| Q |
118 |
aattccattaatctagagtctagacctttatgtataaatatgatataagttgaattgactagaaagttagagnnnnnnntataaaacactaattagtgtc |
217 |
Q |
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| T |
17319958 |
aagtcctttaatatagagtctagacctttatgtatgaatatgatataagttgaattgactaaaaagttagagagaaa---ataaaacactaattagtgtc |
17320054 |
T |
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| Q |
218 |
aaaatcaagggctaatttcat |
238 |
Q |
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| T |
17320055 |
aaaatcaagggctaatttcat |
17320075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 17308299 - 17308380
Alignment:
| Q |
18 |
cttcacactctcaacagcaccttgagccatgttcttcacctgctctccagtctgca--ataagaagataaacttttaacaat |
97 |
Q |
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| T |
17308299 |
cttcacactctcaacagcaccttgagccatgttcttcatttgctctccagtctgcaatataagaagatatactttttacaat |
17308380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 17308430 - 17308482
Alignment:
| Q |
136 |
tctagacctttatgtataaatatgatataagttgaattgactagaaagttaga |
188 |
Q |
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| T |
17308430 |
tctagacctttatgtataaatgtgatataaattgtattaacatgaaagttaga |
17308482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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