View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10390_low_2 (Length: 582)
Name: NF10390_low_2
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 21 - 562
Target Start/End: Original strand, 28916020 - 28916561
Alignment:
| Q |
21 |
ctgatgaaagcttttgatacaatgtacaacttagtcatgtgcaatattattttctacaaattaaagcaaattgcatcaaaattacatgtatgatcgtctt |
120 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28916020 |
ctgatgaaagcttttgatacaatgtacgacttagtcatgtgcaatattattttctacaaattaaagcaaattgcatcaaaattacatgtatgatcctctt |
28916119 |
T |
|
| Q |
121 |
gctagcaaaactaactactgtacttttaataaaaagttgtatgctagattttttcagaccagtaagttttaagcgaagaccaagattacctgttacttct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916120 |
gctagcaaaactaactactgtacttttaataaaaagttgtatgctagattttttcagaccagtaagttttaagcgaagaccaagattacctgttacttct |
28916219 |
T |
|
| Q |
221 |
aacagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttgccagcaaaggtatctggttgcttca |
320 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916220 |
aaaagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttgccagcaaaggtatctggttgcttca |
28916319 |
T |
|
| Q |
321 |
aaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttggcagctctttggaacgtacattctg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916320 |
aaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttggcagctctttggaacgtacattctg |
28916419 |
T |
|
| Q |
421 |
acaagattttatagttgaattcaaatttctgtgcttttgaaatttgaatgcctcattatcatccctttcttccgaactactgatattactatcagtttct |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28916420 |
acaagattttatagttgaattcaaatttctgtgctttcgaaatttgaatgcctcattatcatccctttcttctgaactactgatattactatcagtttct |
28916519 |
T |
|
| Q |
521 |
tcaaaattatctgcaaaatgcgatgcaagaagcttttgtatg |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28916520 |
tcaaaattatctgcaaaatgcgatgcaagaagcttttgtatg |
28916561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 121 - 562
Target Start/End: Original strand, 28925359 - 28925787
Alignment:
| Q |
121 |
gctagcaaaactaactactgtacttttaataaaaagttgtatgctagattttttcagaccagtaagttttaagcgaagaccaagattacctgttacttct |
220 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||||| | |||||||||||||||||| ||| |||| |||||||||| ||||| | |||| | |
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| T |
28925359 |
gctagcaaaactaactacttagctgttaataaaaaattgtatggtttattttttcagaccagtaacttt-aagcaaagaccaagagtacctttgacttgt |
28925457 |
T |
|
| Q |
221 |
aacagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttgccagcaaaggtatctggttgcttca |
320 |
Q |
| |
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| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
28925458 |
acgagcagatgagaattcttttgtaaatagtcatttgggtcggatttgattctaacataacttcccaacactttgccatc---ggtttctggttgcttca |
28925554 |
T |
|
| Q |
321 |
aaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttggcagctctttggaacgtacattctg |
420 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
28925555 |
aaagctcctcaattaagctcctcttcaggtagacaagttttatgtttgaactaactatagctgcaaatccacttggcagctctttcgaacgtacattctg |
28925654 |
T |
|
| Q |
421 |
acaagattttatagttgaattcaaatttctgtgcttttgaaatttgaatgcctcattatcatccctttcttccgaactactgatattactatcagtttct |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
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| T |
28925655 |
acaagattttatagttgaattcaaatttctgtgctttcgaaatttgaatgcctcattgtcatccctttcttctgaac---------tactatcagtttct |
28925745 |
T |
|
| Q |
521 |
tcaaaattatctgcaaaatgcgatgcaagaagcttttgtatg |
562 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
28925746 |
tcaaaattatctacaaaatgagatgcaagaagcttctgtatg |
28925787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 168 - 558
Target Start/End: Original strand, 28901753 - 28902145
Alignment:
| Q |
168 |
attttttcagaccagtaagttttaagcgaagaccaagattacctgttacttctaacagcagatgagaattcttctgtaaatagtcatttgggtcggattt |
267 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| ||||||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28901753 |
attttttcagaccagtaacttt-aagcgaaaaccaagattacctatgacttgtaagagcagatgagaattcttctgtaaatagtcatttgggtcggattt |
28901851 |
T |
|
| Q |
268 |
ggttctaacataacttcccaacactttgccagcaaaggtatctggttgcttcaaaagctcctcaattaagctcctcttcaagtagacaagttttatgttt |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
28901852 |
ggttctaacataacttcccaacactttgccatcaaaggtttctggttgcttcaaaagctcctcaattaagcttctcttcaagtagacaagtttcatgttt |
28901951 |
T |
|
| Q |
368 |
gaactaattattcctgcaaatccacttggcagctctttggaacgtacattctgacaagattttatagttgaattcaaatttctgtgcttttgaaatttga |
467 |
Q |
| |
|
||| ||||||| |||||||| |||||||| |||||| || ||| ||||||||||| |||| |||||||||||||||||| |||||| ||||||||| |
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|
| T |
28901952 |
gaattaattatagctgcaaatacacttggctgctcttcagagagtatattctgacaaggttttgtagttgaattcaaatttccctgctttggaaatttga |
28902051 |
T |
|
| Q |
468 |
atgcctcatt---atcatccctttcttccgaactactgatattactatcagtttcttcaaaattatctgcaaaatgcgatgcaagaagcttttg |
558 |
Q |
| |
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|||| |||| || |||||||||||| |||||| ||||| ||| ||||||||| |||||||||||||||||||||||| ||||||| ||||| |
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| T |
28902052 |
atgctccattaccattatccctttcttctgaactagtgataataccatcagtttcctcaaaattatctgcaaaatgcgattcaagaaggttttg |
28902145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 196 - 562
Target Start/End: Original strand, 28891826 - 28892195
Alignment:
| Q |
196 |
aagaccaagattacctgttacttctaacagcagatgagaattcttctgtaaatagtcatttgggtcggatttggttctaacataacttcccaacactttg |
295 |
Q |
| |
|
||||| |||||||||| |||||| || |||||||||||||| ||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
28891826 |
aagacaaagattacctattacttgtacgagcagatgagaatttttctgtaaataatcatttcggtcggatttgattctaacaaaacttcccaacactttg |
28891925 |
T |
|
| Q |
296 |
ccagcaaaggtatctggttgcttcaaaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttg |
395 |
Q |
| |
|
|| ||||||| ||||| | ||| |||||||| ||||| ||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
28891926 |
acatcaaaggtttctggcttctttaaaagctcatcaatcaaggtcctccttaagtagacaagttttatgtttgaattaattatagctgcaaatccacttg |
28892025 |
T |
|
| Q |
396 |
gcagctctttggaacgtacattctgacaagattttatagttgaattcaaatttctgtgcttttgaaatttgaatgcctcatt---atcatccctttcttc |
492 |
Q |
| |
|
|| |||||| || ||| ||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||| || |||||||||||| |
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|
| T |
28892026 |
gctgctcttgagagagtagattctgacaaggttttgtagttgaattcaaatttctctgctttggaaatttgaatgcctcattaccattatccctttcttc |
28892125 |
T |
|
| Q |
493 |
cgaactactgatattactatcagtttcttcaaaattatctgcaaaatgcgatgcaagaagcttttgtatg |
562 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28892126 |
tgaactactgataataccatcagtttcttcaaaattatctacaaaatgcgatgcaagaagcttttgtatg |
28892195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 201 - 562
Target Start/End: Original strand, 28935030 - 28935392
Alignment:
| Q |
201 |
caagattacctgttacttctaacagcagatgagaattcttctgtaaatagtcatttggg-tcggatttggttctaacataacttcccaacactttgccag |
299 |
Q |
| |
|
||||||||||| |||||| || || ||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||||||||||||| || |
|
|
| T |
28935030 |
caagattacctattacttgtacgagaagatgggaattcttctgtaaatagtcatttggggtcggttttggttctaacaaaacatcccaacactttgtcat |
28935129 |
T |
|
| Q |
300 |
caaaggtatctggttgcttcaaaagctcctcaattaagctcctcttcaagtagacaagttttatgtttgaactaattattcctgcaaatccacttggcag |
399 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |||||| | ||||| ||||||||||| |||| ||||||||||||||| ||||| | |||||||| || |
|
|
| T |
28935130 |
caaaggtttctggttgcttccgaagctcctcgattaaggttctctttaagtagacaagctttaggtttgaactaattatagctgcatagccacttggaag |
28935229 |
T |
|
| Q |
400 |
ctctttggaacgtacattctgacaagattttatagttgaattcaaatttctgtgcttttgaaatttgaatgcctcattatcatccctttcttccgaacta |
499 |
Q |
| |
|
| || ||| | || |||||||||||||| ||| || || |||||||| |||||| ||||||||||||||| ||||||||| ||||||| |||| | |
|
|
| T |
28935230 |
tttttcagaaactgcactctgacaagattttgtagccgagtttaaatttctctgctttggaaatttgaatgccttgttatcatccatttcttctgaacca |
28935329 |
T |
|
| Q |
500 |
ctgatattactatcagtttcttcaaaattatctgcaaaatgcgatgcaagaagcttttgtatg |
562 |
Q |
| |
|
| ||| || ||| ||| | |||| ||| ||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
28935330 |
cagatcatatcatccgttccctcaacattctctgcaaaatgtggtgccagaaggttttgtatg |
28935392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 28925171 - 28925252
Alignment:
| Q |
40 |
caatgtacaacttagtcatgtgcaatattattttctacaaattaaagcaaattgc-atcaaaattacatgtatgatcgtctt |
120 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
28925171 |
caatgtatgacttagtcgtgtgcaatattcttttgtaccaattaaagcaaattgctatcaaaattacatgtatgatcctctt |
28925252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 28901543 - 28901624
Alignment:
| Q |
40 |
caatgtacaacttagtcatgtgcaatattattttctacaaattaaagcaaattgc-atcaaaattacatgtatgatcgtctt |
120 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||| |||||||||||||||| |||||||| ||| ||||||| |||| |
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|
| T |
28901543 |
caatgtatgacttcgtcatgtgcaatattcttttctaccaattaaagcaaattgctatcaaaatgtcatatatgatcctctt |
28901624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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