View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_low_3 (Length: 578)
Name: NF10390_low_3
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Complemental strand, 2489089 - 2488539
Alignment:
| Q |
18 |
caatgaatctctgtcactgaattttcccgcctggaatattcccagagcatgggacaaactgtttcgaaatacaattaagtaagtatataaaagttagatt |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489089 |
caatgaatctctgtcaccgaattttcccgcctggaatattcccagagcatgggacaaactgtttcgaaatacaattaagtaagtatataaaagttagatt |
2488990 |
T |
|
| Q |
118 |
gttcatgcagcaaaatttgccggtctaacctgttgcatggaatgatcagttttccatttctgtattcaggctctttgttcttcattaaatgatacgaaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2488989 |
gttcatgcagcaaaatttgccggtctaacctgttgcatggaatgatcagttttccatttctgtattcaggctctttgttcttcattatatgatacgaaat |
2488890 |
T |
|
| Q |
218 |
tgctgacacgataatctcttctatatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488889 |
tgctgacacgataatctcttctatatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaac |
2488790 |
T |
|
| Q |
318 |
acttccatgatatggttcttgttatcttgaatctgtatcttcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtg |
417 |
Q |
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| T |
2488789 |
acttccatgatatggttcttgttatcttgaatctgtatcttcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtg |
2488690 |
T |
|
| Q |
418 |
gtttgatttctatgttgtaagggaagagagaggtaagcatctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaat |
517 |
Q |
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| T |
2488689 |
gtttgatttctatgttgtaagggaagagagaggtaagcatctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaat |
2488590 |
T |
|
| Q |
518 |
tggtccagatagtttcgttaacattgtctggaatagtttatatatcctttg |
568 |
Q |
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| T |
2488589 |
tggtccagatagtttcgttaacattgtctggaatagtttatatatcctttg |
2488539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 162 - 568
Target Start/End: Original strand, 41592228 - 41592634
Alignment:
| Q |
162 |
atcagttttccatttctgtattcaggctctttgttcttcattaaatgatacgaaattgctgacacgataatctcttctatatagttactgagaaccattg |
261 |
Q |
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||||| || |||||||||||||| | |||||||| ||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41592228 |
atcagcttcccatttctgtattcgaggtctttgtttttcatcaaatgatgagagattgctgacacaataatctcttctatatagttactgagaaccattg |
41592327 |
T |
|
| Q |
262 |
tgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgttatcttgaatctgtatcttctt |
361 |
Q |
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| T |
41592328 |
tgtcttccacacagatggaatccaagtcatcgcaatcaagatcattggctgcaagcacttccgtaatatgatttttattatcctgaacttgtatcatctt |
41592427 |
T |
|
| Q |
362 |
catatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaagcatctca |
461 |
Q |
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||||||| |||| ||||| |||||||||||||| ||| | ||||||||||| || ||| |||||||||| | ||| |||||||| ||||| ||||| |
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| T |
41592428 |
catatcctcttccaattgtgacttccagctgacgagatgtgattcatcttccggaggtctgatttctatatcgtacgggaagagcacagtaagtttctca |
41592527 |
T |
|
| Q |
462 |
tctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatagtttatata |
561 |
Q |
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|| | | || |||||||||||||||| | || |||||||||| ||||| ||| |||||||| ||| || | |||||| | ||||| | ||||||| |
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| T |
41592528 |
tccaattcttcaaattcattaccagaatctagaactcgcgaaccaagaatcagaatcggtccagagagtctcttcaacattttttggaacatgttatata |
41592627 |
T |
|
| Q |
562 |
tcctttg |
568 |
Q |
| |
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|| |||| |
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| T |
41592628 |
tcttttg |
41592634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 8842865 - 8842970
Alignment:
| Q |
235 |
cttctatatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggtt |
334 |
Q |
| |
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||||||| ||||||| |||||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||||||| | ||||||||||||||||| |
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| T |
8842865 |
cttctatgtagttacaaagaaccattgtgtccgctacacagatggaatcaatgtcatgaatatcaagataattggctgcaaggacttccatgatatggtt |
8842964 |
T |
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| Q |
335 |
cttgtt |
340 |
Q |
| |
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|||||| |
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| T |
8842965 |
cttgtt |
8842970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 32248412 - 32248453
Alignment:
| Q |
267 |
gctacacagatggaatccaggtcatgacaatcaagatcattg |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32248412 |
gctacacagatggaatccaggtcatgacaatcgagatcattg |
32248453 |
T |
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