View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_low_6 (Length: 399)
Name: NF10390_low_6
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 107 - 391
Target Start/End: Original strand, 45108337 - 45108621
Alignment:
| Q |
107 |
atatatagttaccatcatttgtgaaatgagcttgggtaaacccaacttcttgataggaaaattgatagcccttgttgtgacataaattagaatgacttga |
206 |
Q |
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| T |
45108337 |
atatatagttaccatcatttgtgaaatgagcttgggtaaacccaactgcttgataggaaaattgatagcccttgttgtgacataaattagaatgacttga |
45108436 |
T |
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| Q |
207 |
tgaagaaatactgggaaagaggacctgaatggactcccttcggtctcatgttttccccatatgccatgggagagaatattaggcggggtggaaatgcaaa |
306 |
Q |
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| T |
45108437 |
tgaagaaatactgggaaagaggacctgaatggactcccttcggactcatgttttccccatatgccatgggagagaatattaggcggggtggaaatgcaaa |
45108536 |
T |
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| Q |
307 |
cattatagttcagaagattagaattaataacattgttggacatggacgtttcattcatagatttaaataatgtatcatctgtgct |
391 |
Q |
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| T |
45108537 |
cattatagtttagaagattagaattaacaacattgttggacatggacgtttcattcatagatttaaataatgtatcatctgtgct |
45108621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 45108241 - 45108270
Alignment:
| Q |
18 |
gcaacaaggaaatacttgtattacaagtta |
47 |
Q |
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| T |
45108241 |
gcaacaaggaaatacttgtattacaagtta |
45108270 |
T |
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