View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10390_low_8 (Length: 387)
Name: NF10390_low_8
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10390_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 160 - 371
Target Start/End: Complemental strand, 14228893 - 14228682
Alignment:
| Q |
160 |
cgaattcaaatgaaaattgaaaatgttgcttgtagattcctgcagacatggtggtaaattcaatgataatagcatccgtggctcgtagtaagaatctttg |
259 |
Q |
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| T |
14228893 |
cgaatttatatgaaaattgaaaatgttgcttgcagattcctgcggacatggtggtaaattcgatgataatagcatccgtggctcgtagtaagaatctttg |
14228794 |
T |
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| Q |
260 |
caggagtttgatctaccatattggctcttcgtccagaaatccattcaaatattctgatttaatagatgacatgcattgctattttacaaaaaatccatgg |
359 |
Q |
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| T |
14228793 |
caggagtttgatctaccatattggctcttcgtccagaaatccattcaaatattctgatttaatagatgacatgcattgctattttacaaaaaatccatgg |
14228694 |
T |
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| Q |
360 |
ataaataaaaat |
371 |
Q |
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|||||||||||| |
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| T |
14228693 |
ataaataaaaat |
14228682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 160 - 371
Target Start/End: Complemental strand, 14222523 - 14222312
Alignment:
| Q |
160 |
cgaattcaaatgaaaattgaaaatgttgcttgtagattcctgcagacatggtggtaaattcaatgataatagcatccgtggctcgtagtaagaatctttg |
259 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14222523 |
cgaattcaaatgaaaattgaaaatgttgctcgcagattcctgcggacatggtggtaaattcaatgataatagcatccgtggctcgtagtaagaatctttg |
14222424 |
T |
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| Q |
260 |
caggagtttgatctaccatattggctcttcgtccagaaatccattcaaatattctgatttaatagatgacatgcattgctattttacaaaaaatccatgg |
359 |
Q |
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| T |
14222423 |
ccggagtttgatctaccatattggctcttcgtccagaaatccattcaaattttctgatttagtagatggcatgcattgctatttttcaaaaaatccatgg |
14222324 |
T |
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| Q |
360 |
ataaataaaaat |
371 |
Q |
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|||||||||||| |
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| T |
14222323 |
ataaataaaaat |
14222312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 14229038 - 14228944
Alignment:
| Q |
14 |
agaactatggactacgtggttgataagtatggtaagggaacaattaggagctttgttggtgttccagagactgtagtagatgtggtgaggccatc |
108 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
14229038 |
agaactatggattacgtggttgataagtatggtaagggaacaattaggagctttgttggtgttccagagacggtagtagatgtggtgagcccatc |
14228944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 14222660 - 14222581
Alignment:
| Q |
23 |
gactacgtggttgataagtatggtaagggaacaattaggagctttgttggtgttccagagactgtagtagatgtggtgag |
102 |
Q |
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| T |
14222660 |
gactacgtgattgataagtatggtaagggattaatgaggagctttgttggtcttccagagacagtactagatgtggtgag |
14222581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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