View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10390_low_9 (Length: 377)

Name: NF10390_low_9
Description: NF10390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10390_low_9
NF10390_low_9
[»] chr7 (7 HSPs)
chr7 (1-377)||(25470392-25470768)
chr7 (3-155)||(8759424-8759581)
chr7 (81-126)||(10675040-10675085)
chr7 (67-126)||(22955079-22955138)
chr7 (67-126)||(49002446-49002505)
chr7 (81-123)||(5781740-5781782)
chr7 (81-126)||(40382111-40382156)
[»] chr5 (17 HSPs)
chr5 (1-377)||(8762897-8763273)
chr5 (1-164)||(13888291-13888454)
chr5 (3-164)||(3014634-3014786)
chr5 (3-155)||(26412017-26412175)
chr5 (312-371)||(25521575-25521634)
chr5 (156-216)||(25521615-25521676)
chr5 (3-156)||(12080437-12080582)
chr5 (81-153)||(10053787-10053867)
chr5 (4-126)||(25654571-25654692)
chr5 (6-126)||(29766508-29766628)
chr5 (3-156)||(33848050-33848209)
chr5 (67-126)||(22616715-22616774)
chr5 (11-128)||(13381121-13381238)
chr5 (67-126)||(33163737-33163796)
chr5 (263-301)||(13887600-13887638)
chr5 (81-126)||(10237635-10237680)
chr5 (81-122)||(41417360-41417401)
[»] chr6 (3 HSPs)
chr6 (1-164)||(4487757-4487920)
chr6 (1-164)||(25441671-25441834)
chr6 (8-128)||(18306589-18306709)
[»] chr3 (17 HSPs)
chr3 (1-164)||(48154388-48154551)
chr3 (3-155)||(5125407-5125564)
chr3 (3-155)||(29923068-29923226)
chr3 (3-155)||(29972221-29972379)
chr3 (3-153)||(42664025-42664180)
chr3 (3-155)||(11019665-11019822)
chr3 (17-128)||(36689672-36689783)
chr3 (3-155)||(54607839-54607990)
chr3 (4-126)||(32180455-32180577)
chr3 (67-126)||(19606681-19606740)
chr3 (64-126)||(26000754-26000816)
chr3 (81-126)||(38392409-38392454)
chr3 (81-126)||(40640412-40640457)
chr3 (263-301)||(13007168-13007206)
chr3 (127-156)||(43486220-43486249)
chr3 (82-123)||(45879269-45879310)
chr3 (81-126)||(49359409-49359454)
[»] chr4 (9 HSPs)
chr4 (1-164)||(5914971-5915134)
chr4 (3-155)||(14246379-14246537)
chr4 (4-155)||(5813434-5813587)
chr4 (4-126)||(2266561-2266682)
chr4 (81-126)||(9743812-9743857)
chr4 (81-122)||(54995027-54995068)
chr4 (3-123)||(17612559-17612679)
chr4 (4-72)||(22721955-22722023)
chr4 (127-155)||(22722061-22722089)
[»] chr2 (15 HSPs)
chr2 (1-164)||(32652583-32652746)
chr2 (1-155)||(7565482-7565638)
chr2 (74-158)||(40912464-40912548)
chr2 (3-155)||(6357008-6357166)
chr2 (2-155)||(43445256-43445422)
chr2 (3-155)||(59360-59518)
chr2 (4-126)||(19073574-19073696)
chr2 (1-126)||(19093676-19093801)
chr2 (4-126)||(6177996-6178118)
chr2 (83-124)||(15651072-15651113)
chr2 (81-126)||(18947391-18947436)
chr2 (11-120)||(41644101-41644210)
chr2 (14-58)||(40912419-40912463)
chr2 (67-126)||(17244837-17244896)
chr2 (3-127)||(18514435-18514559)
[»] chr8 (3 HSPs)
chr8 (3-155)||(1872616-1872773)
chr8 (81-126)||(34685997-34686042)
chr8 (1-126)||(3038627-3038752)
[»] scaffold0312 (1 HSPs)
scaffold0312 (3-155)||(8244-8402)
[»] chr1 (7 HSPs)
chr1 (3-155)||(422170-422328)
chr1 (3-155)||(28012889-28013048)
chr1 (11-126)||(15964322-15964437)
chr1 (64-155)||(7842356-7842453)
chr1 (81-126)||(25943420-25943465)
chr1 (127-156)||(17695282-17695311)
chr1 (67-127)||(16135544-16135604)
[»] scaffold0001 (1 HSPs)
scaffold0001 (67-156)||(65956-66051)
[»] scaffold0262 (1 HSPs)
scaffold0262 (81-156)||(11454-11535)
[»] scaffold0200 (1 HSPs)
scaffold0200 (81-126)||(24599-24644)


Alignment Details
Target: chr7 (Bit Score: 345; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 25470768 - 25470392
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  25470768 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggaccaccgtaacactaaattttactttattac 25470669  T
Q  101 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaacttatgcatccaaaactcatgcatagtttgtttttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  25470668 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaatttatgcatccaaaattcatgcatagtttgtttttc 25470569  T
Q  201 ttcctccaaaattcatgcatggtttgctttctgtttatgcatccaaatggatccaaaatgcgatcttcaccatcgtccaaaattccagatttcttcctcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25470568 ttcctccaaaattcatgcatggtttgctttctgtttatgcatccaaatggatccaaaatacgatcttcaccatcgtccaaaattccagatttcttcctcc 25470469  T
Q  301 aaaattccagatttcttcgtccaaaattcatccactatacgaccaacttatgcatcttcaccatcgcacagcttcat 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  25470468 aaaattccagatttcttcgtccaaaattcatccactatacgaccaacttatacatcttcaccatcacacagcttcat 25470392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 8759581 - 8759424
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||| |||| |||||| |||| ||||| ||| ||||||||| ||||| ||| ||||||||| |||||| | |||| | ||  ||| |||||    
T  8759581 aaaaagtcattttatttagccaataacataattgttgatgtcatgtcagctagtgtctttttgatggaccactgtaagattaaa-tatatcttagtacaa 8759483  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    ||| |||||| |||||||||||||      |||||||||||||||||||||||||||||    
T  8759482 atcggtcctcttacaaaatattaattacttttgatttattaacttattttatttaaaat 8759424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 10675040 - 10675085
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||    
T  10675040 actaaactttactttattacaaattagtcctcatacaaaatattaa 10675085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 22955079 - 22955138
Alignment:
Q  67 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| || ||| |||||| ||||| ||||||||||||||| ||| |||||||||||||    
T  22955079 tggaccactctaaaactaaactttaccttattacaaatcagttctcatacaaaatattaa 22955138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 49002505 - 49002446
Alignment:
Q  67 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| || ||| |||||| ||||| | ||||||||||||||||| |||||||||||||    
T  49002505 tggaccactctaaaactaaactttacctcattacaaatcagtcctcatacaaaatattaa 49002446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 5781782 - 5781740
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatat 123  Q
    ||||| ||||||||||||||||||||||| || ||||||||||    
T  5781782 actaagttttactttattacaaatcagtcatcatacaaaatat 5781740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 40382156 - 40382111
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| ||||| ||||||||||||||||| | |||||||||||||    
T  40382156 actaaactttaccttattacaaatcagtccgcatacaaaatattaa 40382111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 8762897 - 8763273
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  8762897 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtctttgtgatggaccaccgtaacactaaattttactttattac 8762996  T
Q  101 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaacttatgcatccaaaactcatgcatagtttgtttttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  8762997 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaatttatgcatccaaaattcatgcatagtttgtttttc 8763096  T
Q  201 ttcctccaaaattcatgcatggtttgctttctgtttatgcatccaaatggatccaaaatgcgatcttcaccatcgtccaaaattccagatttcttcctcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8763097 ttcctccaaaattcatgcatggtttgctttctgtttatgcatccaaatggatccaaaatacgatcttcaccatcgtccaaaattccagatttcttcctcc 8763196  T
Q  301 aaaattccagatttcttcgtccaaaattcatccactatacgaccaacttatgcatcttcaccatcgcacagcttcat 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  8763197 aaaattccagatttcttcgtccaaaattcatccactatacgaccaacttatacatcttcaccatcacacagcttcat 8763273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 13888454 - 13888291
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||     
T  13888454 taaaaaagtcattttatttaaccaattgcatagttgtttatgccatgtcagctagtgtctttgtgatggacccctgtaacactaaattttactttattat 13888355  T
Q  101 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 164  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13888354 aaatcagtcctcatacaaaatattaattgatttattaacttattttatttaaaatttctaaaaa 13888291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 3014786 - 3014634
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  3014786 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagttagtgtctttgtgatggaccactgtaacactaaattttactttattacaa 3014687  T
Q  103 atcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 164  Q
    |||| ||||| |||         | |||||||||||||||||||||||||||||||| ||||    
T  3014686 atcaatcctcatac---------actgatttattaacttattttatttaaaatttctaaaaa 3014634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 26412175 - 26412017
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||| |||| ||||||||||  ||||| ||| ||||||||| | | | |||||||||||||  ||||| |||||||| ||  ||||| |||    
T  26412175 aaaaagtcattttatttagccaatagcatgattgttgatgtcatgtcagctaatatctttgtgatggaccattgtaagactaaattatatcttattgcaa 26412076  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    ||||||||||||| ||||||||||      |||||||||||||||||||||||||||||    
T  26412075 atcagtcctcgtataaaatattaattacttttgatttattaacttattttatttaaaat 26412017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 371
Target Start/End: Complemental strand, 25521634 - 25521575
Alignment:
Q  312 tttcttcgtccaaaattcatccactatacgaccaacttatgcatcttcaccatcgcacag 371  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25521634 tttcttcctccaaaattcatccactgtacgaccaacttatgcatcttcaccatcgcacag 25521575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 25521676 - 25521615
Alignment:
Q  156 ttcttaaaacttatgcatccaaaactcatgcat-agtttgtttttcttcctccaaaattcat 216  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||    
T  25521676 ttcttaaaacttatgcatccaaaattcatgcataagttcgtttttcttcctccaaaattcat 25521615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 12080437 - 12080582
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||| ||||||||||  | ||| |||| ||||| ||| ||||||||| |||||  |  || |||||| || ||| |||||| ||||| |||||||||    
T  12080437 aaaaagttattttgtttagtcgataacataattgttgatgtcatgtcagctagtgtcctgctggtggaccactttaagactaaactttaccttattacaa 12080536  T
Q  103 atcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatt 156  Q
    |||||||||| ||||||||        |||||||||||||||||||||||||||    
T  12080537 atcagtcctcatacaaaat--------atttattaacttattttatttaaaatt 12080582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 10053867 - 10053787
Alignment:
Q  81 actaaattttactttattacaaa--tcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaa 153  Q
    |||||||||||||||||||||||  ||||||||| |||||||||||||      |||||||||||||||||||||||||||    
T  10053867 actaaattttactttattacaaaaatcagtcctcatacaaaatattaattactcttgatttattaacttattttatttaaa 10053787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 25654692 - 25654571
Alignment:
Q  4 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 103  Q
    |||||| |||||||||||||||||| ||| ||||| |||  |||||| | ||||| ||  ||||||||| || ||| |||||| ||||| ||||||||||    
T  25654692 aaaagttattttgtttaaccaatagtataattgttgatgt-atgtcaactagtgtattattgatggaccactctaaaactaaactttaccttattacaaa 25654594  T
Q  104 tcagtcctcgtacaaaatattaa 126  Q
    |||||| | ||||||| ||||||    
T  25654593 tcagtctttgtacaaactattaa 25654571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 29766508 - 29766628
Alignment:
Q  6 aagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaatc 105  Q
    |||| ||||| |||| ||||||| |||  |||| ||||||||||| | |||||| |  ||||||||| || ||| |||||| ||||| |||||||||||     
T  29766508 aagttattttatttatccaatagtataactgttaatgccatgtcaactagtgttctactgatggaccactctaagactaaactttaccttattacaaatt 29766607  T
Q  106 agtcctcgtacaaaatattaa 126  Q
    ||| ||| |||||||||||||    
T  29766608 agttctcatacaaaatattaa 29766628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 156
Target Start/End: Original strand, 33848050 - 33848209
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||| | ||||||||| |||||  ||| ||||| ||| ||||| ||| |||||  |  |||| |||  || ||| |||||| ||||| |||||| ||    
T  33848050 aaaaagttactttgtttaatcaataatataattgttaatgacatgtaagctagtgtcatgctgatagactactctaagactaaactttaccttattaaaa 33848149  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaatt 156  Q
    |||| ||||| |||||||||||||      ||||||||||||||| ||||||||||||||    
T  33848150 atcaatcctcatacaaaatattaattatttttgatttattaacttgttttatttaaaatt 33848209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 22616774 - 22616715
Alignment:
Q  67 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| || ||| |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  22616774 tggaccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 22616715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 13381238 - 13381121
Alignment:
Q  11 attttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaatcagtcc 110  Q
    ||||||||||  |||||| |||  |||| ||| ||||||||| |||||| |  || |||||| || |||  ||||| ||||| |||||| |||||| |||    
T  13381238 attttgtttagtcaatagtataactgttgatgtcatgtcagctagtgttctgctggtggacctctctaaggctaaactttaccttattataaatcaatcc 13381139  T
Q  111 tcgtacaaaatattaatt 128  Q
    || |||||||||||||||    
T  13381138 tcatacaaaatattaatt 13381121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 33163796 - 33163737
Alignment:
Q  67 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| || ||| |||||| ||||| |||||||||||||||| || |||||||||||||    
T  33163796 tggaccactttaaaactaaactttaccttattacaaatcagtcttcatacaaaatattaa 33163737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 13887600 - 13887638
Alignment:
Q  263 atcttcaccatcgtccaaaattccagatttcttcctcca 301  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  13887600 atcttcaccatcgctcaaaattccagatttcttcctcca 13887638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 10237680 - 10237635
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  10237680 actaaactttaccttattacaaattagtcatcgtacaaaatattaa 10237635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 41417360 - 41417401
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaata 122  Q
    |||||||||||| |||||||||||||||| || |||||||||    
T  41417360 actaaattttaccttattacaaatcagtcatcatacaaaata 41417401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 4487757 - 4487920
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  4487757 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaattttactttattac 4487856  T
Q  101 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 164  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  4487857 aaatcagtcctcatacaaaacattaattgatttattaacttattttatttaaaatttctaaaaa 4487920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 25441834 - 25441671
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||| |||||||||||||||||||||||| ||    
T  25441834 taaaaaagtcattttgtttaaccaatagcatagttgttcatgtcatgttagctagtgtctttgtgatggaccactgtaacactaaattttactttatcac 25441735  T
Q  101 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 164  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  25441734 aaatcagtcctcatacaaaatattaattgatttattaacttattttatttataatttctaaaaa 25441671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 18306589 - 18306709
Alignment:
Q  8 gtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaatcag 107  Q
    ||||||||||||| ||||||| |||  |||| ||||||||||||| ||||| ||  ||||||||| |||| | |  ||||||||| |||||||||||||     
T  18306589 gtcattttgtttagccaatagaataaatgttgatgccatgtcagctagtgtcttgctgatggaccactgttagatcaaattttaccttattacaaatcaa 18306688  T
Q  108 tcctcgtacaaaatattaatt 128  Q
    |||||||||||||||||||||    
T  18306689 tcctcgtacaaaatattaatt 18306709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 48154388 - 48154551
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  48154388 taaaaaaatcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaattttactttattac 48154487  T
Q  101 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 164  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  48154488 aaatcagtcctcatacaaaacattaattgatttattaacttattttatttaaaatttctaaaaa 48154551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 5125564 - 5125407
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||| ||||| ||||||||||| |||| ||||| ||||||||||||| ||||| ||||||||||||| |||||| |||||| | ||  |||||||||    
T  5125564 aaaaagttattttatttaaccaataacataattgttaatgccatgtcagctagtgtctttgtgatggaccactgtaagactaaa-tatatcttattacaa 5125466  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    |||||||||| |||||||||||||      |||||||||||||||||||||||||||||    
T  5125465 atcagtcctcttacaaaatattaattacttttgatttattaacttattttatttaaaat 5125407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 29923068 - 29923226
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||| |||||| ||||| |||||| || |||||||||||||    || ||||||||||||| || ||| ||||||||||||||||||||||    
T  29923068 aaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggaccactataaaactaaattttactttattacaa 29923167  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    || ||| || ||||||||||||||      |||||||||||||||||||||||||||||    
T  29923168 ataagttcttgtacaaaatattaataacctttgatttattaacttattttatttaaaat 29923226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 29972221 - 29972379
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||| |||||| ||||| |||||| || |||||||||||||    || ||||||||||||| || ||| ||||||||||||||||||||||    
T  29972221 aaaaagtcattttatttaactaatagtatagttcttgatgccatgtcagctgacgtctttgtgatggaccactataaaactaaattttactttattacaa 29972320  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    || ||| || ||||||||||||||      |||||||||||||||||||||||||||||    
T  29972321 ataagttcttgtacaaaatattaataacctttgatttattaacttattttatttaaaat 29972379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 42664025 - 42664180
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||| ||||| ||||  |||||| ||||||||| ||| ||||||||| ||||| ||||||||  ||| |||||| ||||||||||||||||||||||    
T  42664025 aaaaagttattttatttagtcaatagtatagttgttgatgtcatgtcagctagtgtctttgtgataaaccactgtaagactaaattttactttattacaa 42664124  T
Q  103 atcagtcctcgtacaaaa--tattaa---ttgatttattaacttattttatttaaa 153  Q
    ||||||||||||||||||  |||| |   |||||||||||||| ||| ||||||||    
T  42664125 atcagtcctcgtacaaaaattatttacttttgatttattaactgattgtatttaaa 42664180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 11019822 - 11019665
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||| |||| ||||||||||  ||||| |||  |||| ||| ||||| ||||||||||||| || ||| |||||||||||  |||||||||    
T  11019822 aaaaagtcattttatttagccaatagcatgattgtt-atgtaatgttagctagtgtctttgtgatggaccactctaagactaaattttatcttattacaa 11019724  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    ||||||||||||| ||||||||||      ||||||||||||||||||| |||||||||    
T  11019723 atcagtcctcgtataaaatattaattacttttgatttattaacttatttaatttaaaat 11019665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 36689783 - 36689672
Alignment:
Q  17 tttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaatcagtcctcgtac 116  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||| ||  ||||||||| | |||| |||||| ||||||||||||||||| ||||||| |||    
T  36689783 tttaaccaataacatagttgttgatgtcatgtcagctagtgtcttgttgatggaccaccgtaaaactaaactttactttattacaaataagtcctcatac 36689684  T
Q  117 aaaatattaatt 128  Q
    ||||||||||||    
T  36689683 aaaatattaatt 36689672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 54607990 - 54607839
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||| |||| |||||| |||| ||||| |||||||||      |||| ||||||||||||| |||||| ||||||| |  ||| |||||||    
T  54607990 aaaaagtcattttatttagccaataacataattgttgatgccatgt------gtgtctttgtgatggaccactgtaagactaaatatatctt-attacaa 54607898  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    ||||||| || |||||||||||||      |||||||||||||||||||||||||||||    
T  54607897 atcagtcttcttacaaaatattaattacttttgatttattaacttattttatttaaaat 54607839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 32180455 - 32180577
Alignment:
Q  4 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 103  Q
    |||||| |||||||||| ||||||| |||  || | ||| |||||| || |||||  |  || |||||| || ||| |||||| ||||| ||||||||||    
T  32180455 aaaagttattttgtttagccaatagtataactgctgatgtcatgtcggctagtgtcctgctggtggaccactctaaaactaaactttaccttattacaaa 32180554  T
Q  104 tcagtcctcgtacaaaatattaa 126  Q
    ||||||||| |||||||||||||    
T  32180555 tcagtcctcatacaaaatattaa 32180577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 19606681 - 19606740
Alignment:
Q  67 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| || ||| |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  19606681 tggaccactctaaaactaaactttaccttattacaaatcagtcctcatacaaaatattaa 19606740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 26000816 - 26000754
Alignment:
Q  64 tgatggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||| |||| || ||| |||||| ||||||||||||||||||||| ||| |||||||||||||    
T  26000816 tgatagaccactctaaaactaaactttactttattacaaatcagtactcatacaaaatattaa 26000754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 38392409 - 38392454
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||||||||| |||||||||||||||| || |||||||||||||    
T  38392409 actaaattttacattattacaaatcagtcatcttacaaaatattaa 38392454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 40640412 - 40640457
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| |||| |||||||||||||||||||| |||||||||||||    
T  40640412 actaaactttattttattacaaatcagtcctcatacaaaatattaa 40640457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 301
Target Start/End: Original strand, 13007168 - 13007206
Alignment:
Q  263 atcttcaccatcgtccaaaattccagatttcttcctcca 301  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  13007168 atcttcaccatcgctcaaaattccagatttcttcctcca 13007206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 43486249 - 43486220
Alignment:
Q  127 ttgatttattaacttattttatttaaaatt 156  Q
    ||||||||||||||||||||||||||||||    
T  43486249 ttgatttattaacttattttatttaaaatt 43486220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 45879269 - 45879310
Alignment:
Q  82 ctaaattttactttattacaaatcagtcctcgtacaaaatat 123  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||    
T  45879269 ctaaactttaccttattacaaatcagtcctcatacaaaatat 45879310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 49359409 - 49359454
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| ||||| |||||| |||||||||||| |||||||||||||    
T  49359409 actaaactttaccttattataaatcagtcctcatacaaaatattaa 49359454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 5914971 - 5915134
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||    
T  5914971 taaaaaagtcattttgtttaaccaatagcaaagttgttcataccatgtcagctagtgtctttgtgatggaccactgtaacactaaattttactttattac 5915070  T
Q  101 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 164  Q
    |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5915071 aaattagtcctcataaaaaatattaattgatttattaacttattttatttaaaatttctaaaaa 5915134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 14246537 - 14246379
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||| |||| ||||||||||| || || |||||||||||||   ||| ||||||||||||| || ||| ||||||||||||||||||||||    
T  14246537 aaaaagtcattttatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggaccactataagactaaattttactttattacaa 14246438  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    || |||||| | ||||||||||||      ||||||||| |||||||||||||||||||    
T  14246437 ataagtccttgaacaaaatattaattatttttgatttataaacttattttatttaaaat 14246379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 155
Target Start/End: Complemental strand, 5813587 - 5813434
Alignment:
Q  4 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 103  Q
    ||||||||||||||||| ||||||||   ||| || ||||||||||||  ||||| ||| ||||||||| |||||| |||||| |||||||||||| |||    
T  5813587 aaaagtcattttgtttagccaatagc---gttcttgatgccatgtcagttagtgtctttatgatggaccactgtaagactaaa-tttactttattaaaaa 5813492  T
Q  104 tcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    | |||| | ||| ||||||||||      |||||||||||||||||||||||||||||    
T  5813491 taagtcattgtataaaatattaattacttttgatttattaacttattttatttaaaat 5813434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 2266561 - 2266682
Alignment:
Q  4 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 103  Q
    |||||| |||||||||| ||||||| |||  |||  ||||||||||||| |||||  |  || |||||| || ||| | |||| ||||| ||||||||||    
T  2266561 aaaagttattttgtttagccaatagtataactgtcgatgccatgtcagctagtgtcctgctggtggacccctctaaaa-taaactttacattattacaaa 2266659  T
Q  104 tcagtcctcgtacaaaatattaa 126  Q
    ||||||||| |||||||||||||    
T  2266660 tcagtcctcatacaaaatattaa 2266682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 9743857 - 9743812
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||    
T  9743857 actaaattttacattattacaaaccagtcctcatacaaaatattaa 9743812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 54995027 - 54995068
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaata 122  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  54995027 actaacttttactttattacaaatcagtcctcatacaaaata 54995068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 17612679 - 17612559
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||| ||||| |||| ||||||| |||  |||  ||| ||||||||| |||||  |  || |||||| || ||| |||||||||||| |||||||||    
T  17612679 aaaaagttattttatttagccaatagtataactgtcgatgtcatgtcagctagtgtcctgttggtggaccactctaaaactaaattttaccttattacaa 17612580  T
Q  103 atcagtcctcgtacaaaatat 123  Q
    || ||||||| || |||||||    
T  17612579 attagtcctcatagaaaatat 17612559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 22721955 - 22722023
Alignment:
Q  4 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggacc 72  Q
    ||||||||||||||||| ||||| | |||  |||| ||||||||||||| ||||| ||  |||||||||    
T  22721955 aaaagtcattttgtttagccaatggaataaatgttgatgccatgtcagctagtgtcttgttgatggacc 22722023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 22722061 - 22722089
Alignment:
Q  127 ttgatttattaacttattttatttaaaat 155  Q
    |||||||||||||||||||||||||||||    
T  22722061 ttgatttattaacttattttatttaaaat 22722089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 4e-66; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 32652746 - 32652583
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| || | ||| ||||||||||||||||||    
T  32652746 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatagaccactatgacattaaattttactttattac 32652647  T
Q  101 aaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttcttaaaa 164  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32652646 aaatcagtcctcatacaaaatattaattgatttattaacttattttatttaaaatttctaaaaa 32652583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 7565638 - 7565482
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaatttta--ctttatt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||   ||||||    
T  7565638 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagctagtgtctttgtgatggaccactgtaacactaaattttattttttatt 7565539  T
Q  99 acaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaat 155  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7565538 acaaatcagtcctcatacaaaatattaattgatttattaacttattttatttaaaat 7565482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 74 - 158
Target Start/End: Original strand, 40912464 - 40912548
Alignment:
Q  74 ctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaattgatttattaacttattttatttaaaatttc 158  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40912464 ctgtaacactaaattttactttattacaaatcagtcctcatacaaaatattaattgatttattaacttattttatttaaaatttc 40912548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 6357166 - 6357008
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||  |||| ||||||||||| || || |||||||||||||   ||| ||||||||||||| || ||| ||||||||||||||||||| ||    
T  6357166 aaaaagtcatttaatttagccaatagcataattcttaatgccatgtcagctgatgtctttgtgatggaccactataagactaaattttactttattataa 6357067  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    || |||||| | ||||||||||||      ||||||||| |||||||||||||||||||    
T  6357066 ataagtccttgaacaaaatattaattacttttgatttataaacttattttatttaaaat 6357008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 155
Target Start/End: Original strand, 43445256 - 43445422
Alignment:
Q  2 aaaaaagtcattttgtttaaccaatagcatagttgttca-------tgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactt 94  Q
    |||||||||||||| |||| ||||||| ||||||||| |       ||||||||||   | |||||||  |||||||| | |||| ||||||||||||||    
T  43445256 aaaaaagtcattttatttagccaatagaatagttgttaacttgttatgccatgtcaattaatgtttttcggatggaccaccgtaagactaaattttactt 43445355  T
Q  95 tattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    |||||||||| ||||||  |||||||||||||      |||||||||||||||||||||||||||||    
T  43445356 tattacaaattagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 43445422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 59518 - 59360
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||| ||||| |||| ||||| ||||| || || ||||||||||||| | ||  ||  |||||||||   |||| |||||||||||  |||||| ||    
T  59518 aaaaagttattttatttagccaattgcataattattgatgccatgtcagctaatggcttcttgatggaccaacgtaagactaaattttatcttattataa 59419  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    ||||||| ||||||||||||||||      |||||||||||||||||||||||||||||    
T  59418 atcagtcatcgtacaaaatattaattacttttgatttattaacttattttatttaaaat 59360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 19073696 - 19073574
Alignment:
Q  4 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 103  Q
    |||||| ||||| ||||  |||||| ||| ||||| ||| ||||||||  |||||  |  || || ||| || ||| |||||||||||| ||||||||||    
T  19073696 aaaagttattttatttagtcaatagtataattgttgatgtcatgtcagtcagtgtcctgctggtgaaccactttaaaactaaattttaccttattacaaa 19073597  T
Q  104 tcagtcctcgtacaaaatattaa 126  Q
    |||||||||||| ||||||||||    
T  19073596 tcagtcctcgtataaaatattaa 19073574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 19093801 - 19093676
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    ||||||||| | ||||||||| |||||| ||| ||||| |||  || ||| | ||||| ||  ||  ||||| || ||| |||||| ||||| |||||||    
T  19093801 taaaaaagttaatttgtttaatcaatagtataattgttgatgttatctcaactagtgtcttgttggaggaccactctaaaactaaactttaccttattac 19093702  T
Q  101 aaatcagtcctcgtacaaaatattaa 126  Q
    |||||||||||| |||||||||||||    
T  19093701 aaatcagtcctcttacaaaatattaa 19093676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 6178118 - 6177996
Alignment:
Q  4 aaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaa 103  Q
    |||||| |||||||||| ||||||| |||  ||   ||| ||||||||| |||||  |  || |||||| || ||  |||||| ||||| ||||||||||    
T  6178118 aaaagttattttgtttagccaatagtataactgccgatgtcatgtcagctagtgtcatgttggtggaccactctagaactaaactttaccttattacaaa 6178019  T
Q  104 tcagtcctcgtacaaaatattaa 126  Q
    |||||| ||||||||||||||||    
T  6178018 tcagtcatcgtacaaaatattaa 6177996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 15651113 - 15651072
Alignment:
Q  83 taaattttactttattacaaatcagtcctcgtacaaaatatt 124  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  15651113 taaactttactttattacaaatcagtcctcatacaaaatatt 15651072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 18947391 - 18947436
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||    
T  18947391 actaaactttaccttattacaaatcagtcctcatacaaaatattaa 18947436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 41644210 - 41644101
Alignment:
Q  11 attttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaatcagtcc 110  Q
    |||||||||| ||||||  ||| ||||| ||| ||||||||| |||||  |  || |||||| || ||| |||||| | ||| |||||||||||||||||    
T  41644210 attttgtttagccaataatataattgttgatgtcatgtcagctagtgtcatgctggtggaccactctaaaactaaactctaccttattacaaatcagtcc 41644111  T
Q  111 tcgtacaaaa 120  Q
    || |||||||    
T  41644110 tcatacaaaa 41644101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 40912419 - 40912463
Alignment:
Q  14 ttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgt 58  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||    
T  40912419 ttgtttaaccgatagaatagttgttcatgccatgtcagctagtgt 40912463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 17244837 - 17244896
Alignment:
Q  67 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| || ||| |||||| ||||| ||||||||||||| ||||| |||||||||||||    
T  17244837 tggaccactctaaaactaaactttaccttattacaaatcactcctcatacaaaatattaa 17244896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 18514435 - 18514559
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||| |||||||||| | ||||| |||  |||| ||| ||||||| | |||||  |  || |||||| || ||| ||| || |||||||||||| ||    
T  18514435 aaaaagttattttgtttagctaatagtataactgttaatgtcatgtcaactagtgtcgtgctggtggaccactataagactgaactttactttattataa 18514534  T
Q  103 atcagtcctcgtacaaaatattaat 127  Q
    |||| || || ||||||||||||||    
T  18514535 atcaatcatcatacaaaatattaat 18514559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 1872616 - 1872773
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    |||||||||||||||| | ||| || |||||||||| ||||||||||||| | ||| ||||||||||| |  ||||| || |||||||||||||||| ||    
T  1872616 aaaaagtcattttgttcagccattaacatagttgttgatgccatgtcagctaatgtctttgtgatgga-cattgtaaaaccaaattttactttattataa 1872714  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
    |||||||||  |||||||||||||      |||||||||||||||||||||||||||||    
T  1872715 atcagtccttatacaaaatattaattacttttgatttattaacttattttatttaaaat 1872773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 34686042 - 34685997
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  34686042 actaaactttactttattacaaatcagtcctcatacaaaatattaa 34685997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 3038752 - 3038627
Alignment:
Q  1 taaaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattac 100  Q
    ||||||| | |||||||||| ||||||| | | ||| | ||| ||||||| | ||||| ||  || |||||| || ||| |||||| ||||| |||||||    
T  3038752 taaaaaaattattttgtttagccaatagtagaattgctgatgtcatgtcaacaagtgtcttgctggtggaccactctaaaactaaactttaccttattac 3038653  T
Q  101 aaatcagtcctcgtacaaaatattaa 126  Q
    |||||| || || |||||||||||||    
T  3038652 aaatcaatcatcatacaaaatattaa 3038627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 8244 - 8402
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||| ||||||||||| |||||| ||| ||  ||||||||| | ||| ||  ||||||||| || ||  |||||| |||||||||||||||    
T  8244 aaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggaccactctacgactaaactttactttattacaa 8343  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
     | ||||||| |||||||||||||      |||||||||||||||||||||||||||||    
T  8344 cttagtcctcatacaaaatattaattacttttgatttattaacttattttatttaaaat 8402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 422328 - 422170
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||||||||| ||||||||||| |||||| ||| ||  ||||||||| | ||| ||  ||||||||| || ||  |||||| |||||||||||||||    
T  422328 aaaaagtcattttatttaaccaataacatagtagttgatatcatgtcagctaatgtcttgttgatggaccactctacgactaaactttactttattacaa 422229  T
Q  103 atcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaat 155  Q
     | ||||||| |||||||||||||      |||||||||||||||||||||||||||||    
T  422228 cttagtcctcatacaaaatattaattacttttgatttattaacttattttatttaaaat 422170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 28013048 - 28012889
Alignment:
Q  3 aaaaagtcattttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaa 102  Q
    ||||||| |||||| ||| ||||||||||| ||||| ||| ||||||||| ||||| ||  |||| ||||   | || | |||| ||||| |||||||||    
T  28013048 aaaaagttattttggttagccaatagcataattgttgatgtcatgtcagctagtgtcttgctgatagaccatcgcaagagtaaactttaccttattacaa 28012949  T
Q  103 atcagtcctcgtacaaaatattaa-------ttgatttattaacttattttatttaaaat 155  Q
    ||||||||||||| ||| ||||||       |||||||||||||||||||||||||||||    
T  28012948 atcagtcctcgtaaaaactattaattactttttgatttattaacttattttatttaaaat 28012889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 15964437 - 15964322
Alignment:
Q  11 attttgtttaaccaatagcatagttgttcatgccatgtcagcgagtgtttttgtgatggaccgctgtaacactaaattttactttattacaaatcagtcc 110  Q
    |||||||||| ||||||| |||  |||  ||| ||||||||| |||||  |  | ||| ||| || ||| |||||||||||| |||||||||||||||||    
T  15964437 attttgtttagccaatagtataactgtcgatgtcatgtcagctagtgtcctactaatgtaccactctaaaactaaattttaccttattacaaatcagtcc 15964338  T
Q  111 tcgtacaaaatattaa 126  Q
    || || ||||||||||    
T  15964337 tcatataaaatattaa 15964322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 7842453 - 7842356
Alignment:
Q  64 tgatggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaatt------gatttattaacttattttatttaaaat 155  Q
    |||| |||| |||||| | |||| ||||  ||||||||||||| |||||||| |||||||| |||      |||||||||||||||||||||||||||    
T  7842453 tgatagaccactgtaagaataaactttatcttattacaaatcaatcctcgtaaaaaatatttattacttttgatttattaacttattttatttaaaat 7842356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 25943465 - 25943420
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||    
T  25943465 actaaattttatcttattacaaatcagtcatcgtacaaaatattaa 25943420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Original strand, 17695282 - 17695311
Alignment:
Q  127 ttgatttattaacttattttatttaaaatt 156  Q
    ||||||||||||||||||||||||||||||    
T  17695282 ttgatttattaacttattttatttaaaatt 17695311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 16135604 - 16135544
Alignment:
Q  67 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaat 127  Q
    |||||| || ||| |||||| |||||  |||||||||||||| ||| ||||||||||||||    
T  16135604 tggaccactctaaaactaaactttaccctattacaaatcagttctcatacaaaatattaat 16135544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 66051 - 65956
Alignment:
Q  67 tggaccgctgtaacactaaattttactttattacaaatcagtcctcgtacaaaatattaa------ttgatttattaacttattttatttaaaatt 156  Q
    |||||| || |||||||||| ||||| |||||| |||| ||||||| |||||||||||||      ||||||||||||||||| ||||||| ||||    
T  66051 tggaccactttaacactaaactttaccttattataaattagtcctcatacaaaatattaattacttttgatttattaacttatattatttataatt 65956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 11454 - 11535
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaat------tgatttattaacttattttatttaaaatt 156  Q
    |||||||||||  ||||||||||||||||||| ||||||||| ||||      | ||||||||||||||||| |||||||||    
T  11454 actaaattttatcttattacaaatcagtcctcatacaaaataataattacttataatttattaacttattttgtttaaaatt 11535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 24599 - 24644
Alignment:
Q  81 actaaattttactttattacaaatcagtcctcgtacaaaatattaa 126  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||    
T  24599 actaaactttaccttattacaaatcagtcatcgtacaaaatattaa 24644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University