View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_11 (Length: 339)
Name: NF10391_low_11
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 31851674 - 31851352
Alignment:
| Q |
17 |
accccacatataggcaatgattataagaagattataccatgcatatattggtttagtcacatgagacagccactagagcagcccatagatcattcaaaac |
116 |
Q |
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| T |
31851674 |
accccacatataggcaatgattataagaagattataccatgcatatattggtttagtcacatgagacagccactagagcagcccatagatcattcaaaac |
31851575 |
T |
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| Q |
117 |
agaatatttttgtaaaaatataaaagtggtagtcgccgagctaagcatgtgtttcggatgtgtttaggagaaatcgaatttgattttttgatgaacaatt |
216 |
Q |
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| T |
31851574 |
acaatatttttgtaaaaatataaaagtggtagtcgccgagctaagcatgtgtttcggatgtgtttaggagaaatcgaatttgattttttgatgaacaatt |
31851475 |
T |
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| Q |
217 |
cttgaccatacaatcgaactccatattatcatacatttctttgaaaatgggaggattaacacacaaaatattaagtgtgttttatatggtgcaacttttt |
316 |
Q |
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| T |
31851474 |
cttgatcatacgatcgaactccatattatcatacctttctttaaaaatgggagaattaacacacaaaatattaagtgtgttttatatggtgcaacttttt |
31851375 |
T |
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| Q |
317 |
cttttctttgattattacacttt |
339 |
Q |
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| T |
31851374 |
cttttctttgattattacacttt |
31851352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 23 - 329
Target Start/End: Complemental strand, 31853718 - 31853410
Alignment:
| Q |
23 |
catataggcaatgattataagaagattataccatgcatatattggtttagtcacatgagacagccactagagcagcccatagatcattcaaaacagaata |
122 |
Q |
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| T |
31853718 |
catataggcaatgattataagaagattataccatgcacatattagtttagtcacatgagacagccaatagagcagcccttagatcattcaaaacataata |
31853619 |
T |
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| Q |
123 |
tttttgtaaaaatataaaagtggtagtcgccgagctaagcatgtgtttcggatgtgtttaggagaaatcgaatttgattttttgatgaacaattcttgac |
222 |
Q |
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| T |
31853618 |
tttcagtaaaaatataaaaatgaaagtcatcgagctaagcatgtgtttaggatgtgtttggaagaaatcgaatttgattttttagtgaacaattcttgat |
31853519 |
T |
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| Q |
223 |
catacaatcgaactccatattatcatacatttctttgaaaatgggaggattaacacac---aaaatattaagtgtgttttatatggtgcaactttttctt |
319 |
Q |
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| T |
31853518 |
cacatgatcgaactccgtattatcatatcattccttgaaaatgagaagattaacacacaaaaaaaaattaattgtgttttaaatggtgcaactttttc-t |
31853420 |
T |
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| Q |
320 |
ttctttgatt |
329 |
Q |
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| T |
31853419 |
ttctttgatt |
31853410 |
T |
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