View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_13 (Length: 325)
Name: NF10391_low_13
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 306
Target Start/End: Complemental strand, 16379886 - 16379589
Alignment:
| Q |
10 |
aagcaaaggtgaagatagttctacaccatctggaaaatatggtaacagacgcaaaaagatattcaattcaactaacatctcaccataaaggacaattttc |
109 |
Q |
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| T |
16379886 |
aagcaaaagtgaagatagttctatgccatctggaaaatatggtaacagacgcaaaaagatattcaattcaactaacatctcaccataaaggacaattttc |
16379787 |
T |
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| Q |
110 |
atannnnnnn-gtcaaatcaagacttcatttagaaggataacctattttaatggaatatttaaatcttaacactattctgcaacaatgcttctctttcac |
208 |
Q |
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| T |
16379786 |
atattttttttgtcaaatcaagacttcatttagaaggataacctattttaatggaatatttaaatcttaacactattctgcaacaatgcttctctttcac |
16379687 |
T |
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| Q |
209 |
tcctcaaaatacagcttctaagcacaaaatggagatagtccaatgtcaactggacaatttggaaacagacacagaatgatattcaattcaactaacat |
306 |
Q |
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| T |
16379686 |
tcctcaaaatacagcttctaagcacaaaatggagatagtccaatgtcaactggacaatttggaaacagacacagaatgatattcaattcaactaacat |
16379589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 16379555 - 16379465
Alignment:
| Q |
120 |
gtcaaatcaagacttcatttagaaggataacctattttaatggaatatttaaatcttaacactattctgcaacaatgcttctctttcactc |
210 |
Q |
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| T |
16379555 |
gtcaaatcaatacttcatttagaaggaaattttacttggatgaaatatttaaatcttaatactattatgtaacgatgcttctctttcactc |
16379465 |
T |
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