View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10391_low_17 (Length: 264)

Name: NF10391_low_17
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10391_low_17
NF10391_low_17
[»] chr5 (2 HSPs)
chr5 (187-247)||(6408328-6408388)
chr5 (187-227)||(22221624-22221664)
[»] chr6 (3 HSPs)
chr6 (187-227)||(4966507-4966547)
chr6 (205-247)||(9818465-9818507)
chr6 (191-247)||(9824171-9824225)
[»] chr4 (1 HSPs)
chr4 (190-243)||(43545726-43545780)


Alignment Details
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 6408388 - 6408328
Alignment:
Q  187 atgaaaactaaaacatagaagaatgcacaaaattaaacacaaattcattactaatcatcaa 247  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6408388 atgaaaactagaacatagaagaatgcacagaattaaacacaaattcattactaatcatcaa 6408328  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 22221624 - 22221664
Alignment:
Q  187 atgaaaactaaaacatagaagaatgcacaaaattaaacaca 227  Q
    ||||| |||||||||||||| ||| ||||||||||||||||    
T  22221624 atgaagactaaaacatagaacaatacacaaaattaaacaca 22221664  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 4966507 - 4966547
Alignment:
Q  187 atgaaaactaaaacatagaagaatgcacaaaattaaacaca 227  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4966507 atgaaaactaaaacatagaagaatgcacaaaattaaacaca 4966547  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 9818465 - 9818507
Alignment:
Q  205 aagaatgcacaaaattaaacacaaattcattactaatcatcaa 247  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  9818465 aagaacgcacaaaattaaacacatattcattactaatcatcaa 9818507  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 9824171 - 9824225
Alignment:
Q  191 aaactaaaacatagaagaatgcacaaaattaaacacaaattcattactaatcatcaa 247  Q
    ||||||||||||  ||||||||||||||||||  ||| |||||||||||||||||||    
T  9824171 aaactaaaacatcaaagaatgcacaaaattaa--acatattcattactaatcatcaa 9824225  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 43545780 - 43545726
Alignment:
Q  190 aaaactaaaacatagaagaatgcacaaaatt-aaacacaaattcattactaatca 243  Q
    ||||||||||||||||| || |||||||||| ||||||| |||| ||||||||||    
T  43545780 aaaactaaaacatagaaaaacgcacaaaattaaaacacatattcgttactaatca 43545726  T

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