View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_19 (Length: 249)
Name: NF10391_low_19
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1078205 - 1077967
Alignment:
| Q |
1 |
cattgacagtaggtataagtctcacattttgttgtctgaaactactgtagctataggctattgagatgaaatttttccattggtatatctaatcaaagtt |
100 |
Q |
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| T |
1078205 |
cattgaccgtaggtataagtctcacattttgttgtccaaaactactgtagctataggctattgagatgaaatttttccattggtatatctaatcaaagtt |
1078106 |
T |
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| Q |
101 |
gacggaactaaacgtccattgatatatgtttttcatctagcatctattaccgaaatagtaacctcattcattgagaaaggcttcgttgtagattctccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1078105 |
gacggaactaaacgtccattgatatatgtttttcatctagcatctattaccgaaatagtaacctcattcattgagaaaggcttcgttgtagattctccct |
1078006 |
T |
|
| Q |
201 |
cattagagaccctttgtattatgaaaccaggttcctttg |
239 |
Q |
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| T |
1078005 |
cattagagaccctttgtattatgaaaccaggttcctttg |
1077967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 1051174 - 1051064
Alignment:
| Q |
129 |
tttttcatctagcatctattaccgaaatagtaacctcattcattgagaaaggcttcgttgtagattctccctcattagagaccctttgtattatgaaacc |
228 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| |
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| T |
1051174 |
tttttcatctagcatctattaacgaaatagtaacctcattgattgagaaaggcttcgttgtagattctccttcatcaaagaccctttgtattatgaaacc |
1051075 |
T |
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| Q |
229 |
aggttcctttg |
239 |
Q |
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| T |
1051074 |
aggttcctttg |
1051064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 1091956 - 1091846
Alignment:
| Q |
129 |
tttttcatctagcatctattaccgaaatagtaacctcattcattgagaaaggcttcgttgtagattctccctcattagagaccctttgtattatgaaacc |
228 |
Q |
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|||||||||||||| |||||| ||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1091956 |
tttttcatctagcacctattaacgaaatagtgacctcattgattgagaaagacttcgttgtagattctccctcattagagaccctttgcattatgaaacc |
1091857 |
T |
|
| Q |
229 |
aggttcctttg |
239 |
Q |
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||||||||||| |
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| T |
1091856 |
aggttcctttg |
1091846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 1095010 - 1094880
Alignment:
| Q |
1 |
cattgacagtaggtataagtctcacattttgttgtctgaaactactgtagctataggctattgagatgaaatttttccattggtatatctaatcaaagtt |
100 |
Q |
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|||||||| ||| | ||||||| | |||||||||||||||||||| ||||||| ||||||| || | |||||| || ||||||||| ||||||||||| |
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| T |
1095010 |
cattgacaatagatgtaagtcttaaattttgttgtctgaaactaccaaagctatatgctattgggacggaattttgccgttggtatatgtaatcaaagtt |
1094911 |
T |
|
| Q |
101 |
gacggaactaaacgtccattgatatatgttt |
131 |
Q |
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||| ||||||||||||||||| ||||||||| |
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| T |
1094910 |
gacagaactaaacgtccattggtatatgttt |
1094880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 1065658 - 1065596
Alignment:
| Q |
69 |
aaatttttccattggtatatctaatcaaagttgacggaactaaacgtccattgatatatgttt |
131 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
1065658 |
aaatttttccgttggtatatctaatcaaagttgacggagctaaacgtccattggtatatgttt |
1065596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 1108263 - 1108208
Alignment:
| Q |
184 |
cgttgtagattctccctcattagagaccctttgtattatgaaaccaggttcctttg |
239 |
Q |
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|||||||||||||| ||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
1108263 |
cgttgtagattctctttcagtagagaccatttgtattacgaaaccaggttcctttg |
1108208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1065696 - 1065660
Alignment:
| Q |
1 |
cattgacagtaggtataagtctcacattttgttgtct |
37 |
Q |
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||||||| || |||||||||||||||||||||||||| |
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| T |
1065696 |
cattgacggttggtataagtctcacattttgttgtct |
1065660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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