View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_2 (Length: 584)
Name: NF10391_low_2
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 480; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 16 - 562
Target Start/End: Original strand, 5272853 - 5273393
Alignment:
| Q |
16 |
catatatcctcgcatcaaataattgattgtataactctatgatgtgatgaaagcaaaataattcatgcatacacatcttaatctacctgcattcctttaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5272853 |
catatatcctcgcatcaaataattgattgtataactctatgatgtgatgaaagcaaaataattcatgcatacacatcttaatctacctgcattcctttaa |
5272952 |
T |
|
| Q |
116 |
tcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctnnnnnnnn--ctaattaatcagaattatcat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5272953 |
tcatataataataatattattgtcagtgtcaaatcttctgtctcacaactaattaatcaaatttttcctaaaagaaaaactaattaatcagaattatcat |
5273052 |
T |
|
| Q |
214 |
ataatgcactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273053 |
ataatgcactagcctagtttacctttctatgtccctgacaggtagtgtttgctacctatttgatatgaaaaatgttgtaacatcacattttctttccaac |
5273152 |
T |
|
| Q |
314 |
taaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtactatcaaatatcaat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5273153 |
taaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtac-------tatcaat |
5273245 |
T |
|
| Q |
414 |
caagtagtaatctcaagtgtcctaaacactaatcaacattcaaaactctttaaaacaattacttactacaatgatgaaactacgatctcttttctttgcc |
513 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273246 |
caagtagtaatctcaagtgtcctaaacactaatcaacattcaaaactcttt-aaacaattacttactacaatgatgaaactacgatctcttttctttgcc |
5273344 |
T |
|
| Q |
514 |
tcaattctacagctactaattctcaccctctactattccactaccacct |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5273345 |
tcaattctacagctactaattctcaccctctactattccactaccacct |
5273393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 301 - 402
Target Start/End: Original strand, 5268732 - 5268833
Alignment:
| Q |
301 |
ttttctttccaactaaacgaaacctttcaccaatgagcatcctcaataaaagccaatcccttctccctcattcctcacataaggacacaaataaagtact |
400 |
Q |
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||||||||| | |||||| ||||||| || |||| ||||||||||||||||| |||||| ||||||||||||||||||| |||||||| | | ||||||| |
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|
| T |
5268732 |
ttttctttctacctaaactaaaccttgcatcaattagcatcctcaataaaaggcaatccattctccctcattcctcacaaaaggacaccagttaagtact |
5268831 |
T |
|
| Q |
401 |
at |
402 |
Q |
| |
|
|| |
|
|
| T |
5268832 |
at |
5268833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 5268598 - 5268643
Alignment:
| Q |
29 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
74 |
Q |
| |
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|||||||||||||| || ||||||||||||||||||||||||||| |
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|
| T |
5268598 |
atcaaataattgatagttgaactctatgatgtgatgaaagcaaaat |
5268643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 31152919 - 31152874
Alignment:
| Q |
29 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
74 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||||||||||||| |
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|
| T |
31152919 |
atcaaataattgatagtttaactctgtgatgtgatgaaagcaaaat |
31152874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 74
Target Start/End: Complemental strand, 34286235 - 34286190
Alignment:
| Q |
29 |
atcaaataattgattgtataactctatgatgtgatgaaagcaaaat |
74 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| |||||| |
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|
| T |
34286235 |
atcaaataattgatagtttaactctatgatgtgatgaaatcaaaat |
34286190 |
T |
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