View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_25 (Length: 239)
Name: NF10391_low_25
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 54180342 - 54180178
Alignment:
| Q |
60 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54180342 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg |
54180243 |
T |
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| Q |
160 |
ttggatgctattatggttataccaaagatcgttgtggcgatcctgttcatgttatggatgctttt |
224 |
Q |
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| T |
54180242 |
ttggatgctattatggttataacaaagatcgttgtggcgatcctgttcatgttatggatgttttt |
54180178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 41942793 - 41942910
Alignment:
| Q |
60 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg |
159 |
Q |
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||||||||||||||||| ||||||||||| |||||| ||||||||||||||| |||||||||||| ||||||| |||||||| ||| |||||||| ||| |
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| T |
41942793 |
tatttgttttcatttgtcggtgctccaagacctaattcaacatcttctattagaaatgagttaatcaaacattgtgaatcttctaagagttgcaaatttg |
41942892 |
T |
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| Q |
160 |
ttggatgctattatggtt |
177 |
Q |
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| T |
41942893 |
ttcgatgttatcatggtt |
41942910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 22794822 - 22794922
Alignment:
| Q |
60 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg |
159 |
Q |
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| T |
22794822 |
tatttgttttcatttgtcggtgctccaaggccaaatttaacatcttcaattagaaacgagttaatcgatcattgtcaatcttctaagagttgcaaacttg |
22794921 |
T |
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| Q |
160 |
t |
160 |
Q |
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| T |
22794922 |
t |
22794922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 41948307 - 41948424
Alignment:
| Q |
60 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg |
159 |
Q |
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||||||||| ||||||| ||||||||||||||| || | |||||||| |||| ||| |||||||| |||||||||||||||| ||| |||| |||| || |
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| T |
41948307 |
tatttgtttacatttgtcggtgctccaaggcctgattcaccatcttctgttagaaatcagttaatcaaacattgcgaatcttctaagagttgtaaacgtg |
41948406 |
T |
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| Q |
160 |
ttggatgctattatggtt |
177 |
Q |
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||||||| ||| |||||| |
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| T |
41948407 |
ttggatgttatcatggtt |
41948424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 60 - 177
Target Start/End: Original strand, 1211060 - 1211177
Alignment:
| Q |
60 |
tatttgttttcatttgttggtgctccaaggcctaatgtaacatcttctattaggaatgagttaatcgaacattgcgaatcttccaagggttgcaaacttg |
159 |
Q |
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||||||||| ||||||| ||||||||||||||| || | ||||||||||||| ||| ||||||||||||||||||||||||| ||| |||| |||| || |
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| T |
1211060 |
tatttgtttacatttgtcggtgctccaaggcctgattcaccatcttctattagaaatcagttaatcgaacattgcgaatcttctaagagttgtaaacgtg |
1211159 |
T |
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| Q |
160 |
ttggatgctattatggtt |
177 |
Q |
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||||||| ||| |||||| |
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| T |
1211160 |
ttggatgttatcatggtt |
1211177 |
T |
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