View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10391_low_28 (Length: 225)
Name: NF10391_low_28
Description: NF10391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10391_low_28 |
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| [»] scaffold0952 (1 HSPs) |
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| [»] scaffold0717 (1 HSPs) |
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| [»] scaffold1562 (1 HSPs) |
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| [»] scaffold1158 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 20535104 - 20534895
Alignment:
| Q |
1 |
atccatattaagcaggcttcttcctttcaagtttaggatctataaacgatggatatataataatggctcattttgccgtcttactccttaacaatgttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
20535104 |
atccatattaagcaggcttcttcctttcaagtttaggatctataaacgatggatatataataatggctcatttttccatcttactccttaacaatgttgt |
20535005 |
T |
|
| Q |
101 |
ggaataaatagcaaatcgcggaacagtattgatttgttcaaattccgctacgtcatagagctatatcaccgtgatatctctgtatatagcggtagcggta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20535004 |
ggaataaatagcaaatcgcggaacagtattgatttgttcaaattccgctacgttatagagctatatcaccgtgatatctctgtatatagcggtagcggta |
20534905 |
T |
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| Q |
201 |
tcaaagtatt |
210 |
Q |
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|||||||||| |
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| T |
20534904 |
tcaaagtatt |
20534895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 29105967 - 29105922
Alignment:
| Q |
5 |
atattaagcaggcttcttcctttcaagtttaggatctataaacgat |
50 |
Q |
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||||| |||||||||| ||| ||||||||||||||||||||||||| |
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| T |
29105967 |
atatttagcaggcttcctccattcaagtttaggatctataaacgat |
29105922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2610 - 2818
Alignment:
| Q |
1 |
atccatattaagcaggcttcttcctttcaagtttaggatctataaacgatggatatataataatggctcattttgccgtcttactccttaacaatgttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| | |
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| T |
2610 |
atccatattaagcaggcttcttcctttcaagtttaggatctataaacgatggatatataataatggctcatttttccgtcttagtccttaacaatgtttt |
2709 |
T |
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| Q |
101 |
ggaataaatagcaaatcgcggaacagtattgatttgttcaaattccgctacgtcatagagctatatcaccgtgatatctctgtatatagcggtagcggta |
200 |
Q |
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| ||||||||||||||||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2710 |
gaaataaatagcaaatcgcagaacaatattgatttgttcaaattccgctatgttatagagctatatcaccgtgatatctctg-atatagcggtagcggta |
2808 |
T |
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| Q |
201 |
tcaaagtatt |
210 |
Q |
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|||||||||| |
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| T |
2809 |
tcaaagtatt |
2818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 2686 - 2589
Alignment:
| Q |
56 |
tataataatggctcattttgccgtcttactccttaacaatgttgtggaataaatagcaaatcgcggaacagtattgatttgttcaaattccgctacgt |
153 |
Q |
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||||||||| ||||||| | |||| ||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| |||||||| |
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| T |
2686 |
tataataattgctcattcttccgttttactccttaacaatattgtgaaataaatagcaaatcgcggaacaatactgatttgttcaaatttcgctacgt |
2589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1562 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold1562
Description:
Target: scaffold1562; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 1410 - 1322
Alignment:
| Q |
56 |
tataataatggctcattttgccgtcttactccttaacaatgttgtggaataaatagcaaatcgcggaacagtattgatttgttcaaatt |
144 |
Q |
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|||||||||| |||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| |
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| T |
1410 |
tataataatgactcattcttccgtcttactccttaacaatattgtgaaataaatagcaaatcgcggaacaatactgatttgttcaaatt |
1322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1158 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold1158
Description:
Target: scaffold1158; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 1183 - 1271
Alignment:
| Q |
56 |
tataataatggctcattttgccgtcttactccttaacaatgttgtggaataaatagcaaatcgcggaacagtattgatttgttcaaatt |
144 |
Q |
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|||||||||| |||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| |
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| T |
1183 |
tataataatgactcattcttccgtcttactccttaacaatattgtgaaataaatagcaaatcgcggaacaatactgatttgttcaaatt |
1271 |
T |
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